PDB entry 2ji9

View 2ji9 on RCSB PDB site
Description: x-ray structure of oxalyl-coa decarboxylase in complex with 3-deaza-thdp
Class: lyase
Keywords: oxalate degradation, thiamine pyrophosphate, lyase, flavoprotein, decarboxylase, cofactor analogue inhibitor complex, non- oxidative decarboxylase, thiamin diphosphate-dependent
Deposited on 2007-02-26, released 2007-07-17
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-31.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.179
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: oxalyl-coa decarboxylase
    Species: OXALOBACTER FORMIGENES [TaxId:847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2ji9a1, d2ji9a2, d2ji9a3
  • Chain 'B':
    Compound: oxalyl-coa decarboxylase
    Species: OXALOBACTER FORMIGENES [TaxId:847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2ji9b1, d2ji9b2, d2ji9b3
  • Heterogens: TPW, MG, ADP, B3P, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ji9A (A:)
msnddnveltdgfhvlidalkmndidtmygvvgipitnlarmwqddgqrfysfrheqhag
yaasiagyiegkpgvcltvsapgflngvtslahattncfpmillsgssereivdlqqgdy
eemdqmnvarphckasfrinsikdipigiaravrtavsgrpggvyvdlpaklfgqtisve
eankllfkpidpapaqipaedaiaraadliknakrpvimlgkgaayaqcddeiralveet
gipflpmgmakgllpdnhpqsaaatrafalaqcdvcvligarlnwlmqhgkgktwgdelk
kyvqidiqanemdsnqpiaapvvgdiksavsllrkalkgapkadaewtgalkakvdgnka
klagkmtaetpsgmmnysnslgvvrdfmlanpdislvneganaldntrmivdmlkprkrl
dsgtwgvmgigmgycvaaaavtgkpviavegdsafgfsgmeleticrynlpvtviimnng
giykgneadpqpgvisctrltrgrydmmmeafggkgyvantpaelkaaleeavasgkpcl
inamidpdagvesgrikslnvvskvgkk

    Sequence, based on observed residues (ATOM records): (download) 
    >2ji9A (A:)
veltdgfhvlidalkmndidtmygvvgipitnlarmwqddgqrfysfrheqhagyaasia
gyiegkpgvcltvsapgflngvtslahattncfpmillsgssereivdlqqgdyeemdqm
nvarphckasfrinsikdipigiaravrtavsgrpggvyvdlpaklfgqtisveeankll
fkpidpapaqipaedaiaraadliknakrpvimlgkgaayaqcddeiralveetgipflp
mgmakgllpdnhpqsaaatrafalaqcdvcvligarlnwlmqhgkgktwgdelkkyvqid
iqanemdsnqpiaapvvgdiksavsllrkalkgapkadaewtgalkakvdgnkaklagkm
taetpsgmmnysnslgvvrdfmlanpdislvneganaldntrmivdmlkprkrldsgtwg
vmgigmgycvaaaavtgkpviavegdsafgfsgmeleticrynlpvtviimnnggiykgn
eadpqpgvisctrltrgrydmmmeafggkgyvantpaelkaaleeavasgkpclinamid
pdagves

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ji9B (B:)
msnddnveltdgfhvlidalkmndidtmygvvgipitnlarmwqddgqrfysfrheqhag
yaasiagyiegkpgvcltvsapgflngvtslahattncfpmillsgssereivdlqqgdy
eemdqmnvarphckasfrinsikdipigiaravrtavsgrpggvyvdlpaklfgqtisve
eankllfkpidpapaqipaedaiaraadliknakrpvimlgkgaayaqcddeiralveet
gipflpmgmakgllpdnhpqsaaatrafalaqcdvcvligarlnwlmqhgkgktwgdelk
kyvqidiqanemdsnqpiaapvvgdiksavsllrkalkgapkadaewtgalkakvdgnka
klagkmtaetpsgmmnysnslgvvrdfmlanpdislvneganaldntrmivdmlkprkrl
dsgtwgvmgigmgycvaaaavtgkpviavegdsafgfsgmeleticrynlpvtviimnng
giykgneadpqpgvisctrltrgrydmmmeafggkgyvantpaelkaaleeavasgkpcl
inamidpdagvesgrikslnvvskvgkk

    Sequence, based on observed residues (ATOM records): (download) 
    >2ji9B (B:)
veltdgfhvlidalkmndidtmygvvgipitnlarmwqddgqrfysfrheqhagyaasia
gyiegkpgvcltvsapgflngvtslahattncfpmillsgssereivdlqqgdyeemdqm
nvarphckasfrinsikdipigiaravrtavsgrpggvyvdlpaklfgqtisveeankll
fkpidpapaqipaedaiaraadliknakrpvimlgkgaayaqcddeiralveetgipflp
mgmakgllpdnhpqsaaatrafalaqcdvcvligarlnwlmqhgkgktwgdelkkyvqid
iqanemdsnqpiaapvvgdiksavsllrkalkgapkadaewtgalkakvdgnkaklagkm
taetpsgmmnysnslgvvrdfmlanpdislvneganaldntrmivdmlkprkrldsgtwg
vmgigmgycvaaaavtgkpviavegdsafgfsgmeleticrynlpvtviimnnggiykgn
eadpqpgvisctrltrgrydmmmeafggkgyvantpaelkaaleeavasgkpclinamid
pdagves