PDB entry 2ji6

View 2ji6 on RCSB PDB site
Description: x-ray structure of oxalyl-coa decarboxylase in complex with 3-deaza-thdp and oxalyl-coa
Class: lyase
Keywords: lyase, flavoprotein, decarboxylase, thiamin diphosphate-dependent, substrate complex, oxalate degradation, thiamine pyrophosphate, non- oxidative decarboxylase
Deposited on 2007-02-26, released 2007-07-17
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-31.
Experiment type: XRAY
Resolution: 2.06 Å
R-factor: 0.176
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: oxalyl-coa decarboxylase
    Species: OXALOBACTER FORMIGENES [TaxId:847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2ji6a1, d2ji6a2, d2ji6a3
  • Chain 'B':
    Compound: oxalyl-coa decarboxylase
    Species: OXALOBACTER FORMIGENES [TaxId:847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2ji6b1, d2ji6b2, d2ji6b3
  • Heterogens: TPW, MG, ADP, OXK, PGE, B3P, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ji6A (A:)
msnddnveltdgfhvlidalkmndidtmygvvgipitnlarmwqddgqrfysfrheqhag
yaasiagyiegkpgvcltvsapgflngvtslahattncfpmillsgssereivdlqqgdy
eemdqmnvarphckasfrinsikdipigiaravrtavsgrpggvyvdlpaklfgqtisve
eankllfkpidpapaqipaedaiaraadliknakrpvimlgkgaayaqcddeiralveet
gipflpmgmakgllpdnhpqsaaatrafalaqcdvcvligarlnwlmqhgkgktwgdelk
kyvqidiqanemdsnqpiaapvvgdiksavsllrkalkgapkadaewtgalkakvdgnka
klagkmtaetpsgmmnysnslgvvrdfmlanpdislvneganaldntrmivdmlkprkrl
dsgtwgvmgigmgycvaaaavtgkpviavegdsafgfsgmeleticrynlpvtviimnng
giykgneadpqpgvisctrltrgrydmmmeafggkgyvantpaelkaaleeavasgkpcl
inamidpdagvesgrikslnvvskvgkk

    Sequence, based on observed residues (ATOM records): (download) 
    >2ji6A (A:)
veltdgfhvlidalkmndidtmygvvgipitnlarmwqddgqrfysfrheqhagyaasia
gyiegkpgvcltvsapgflngvtslahattncfpmillsgssereivdlqqgdyeemdqm
nvarphckasfrinsikdipigiaravrtavsgrpggvyvdlpaklfgqtisveeankll
fkpidpapaqipaedaiaraadliknakrpvimlgkgaayaqcddeiralveetgipflp
mgmakgllpdnhpqsaaatrafalaqcdvcvligarlnwlmqhgkgktwgdelkkyvqid
iqanemdsnqpiaapvvgdiksavsllrkalkgapkadaewtgalkakvdgnkaklagkm
taetpsgmmnysnslgvvrdfmlanpdislvneganaldntrmivdmlkprkrldsgtwg
vmgigmgycvaaaavtgkpviavegdsafgfsgmeleticrynlpvtviimnnggiykgn
eadpqpgvisctrltrgrydmmmeafggkgyvantpaelkaaleeavasgkpclinamid
pdagvesgrikslnvvskv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ji6B (B:)
msnddnveltdgfhvlidalkmndidtmygvvgipitnlarmwqddgqrfysfrheqhag
yaasiagyiegkpgvcltvsapgflngvtslahattncfpmillsgssereivdlqqgdy
eemdqmnvarphckasfrinsikdipigiaravrtavsgrpggvyvdlpaklfgqtisve
eankllfkpidpapaqipaedaiaraadliknakrpvimlgkgaayaqcddeiralveet
gipflpmgmakgllpdnhpqsaaatrafalaqcdvcvligarlnwlmqhgkgktwgdelk
kyvqidiqanemdsnqpiaapvvgdiksavsllrkalkgapkadaewtgalkakvdgnka
klagkmtaetpsgmmnysnslgvvrdfmlanpdislvneganaldntrmivdmlkprkrl
dsgtwgvmgigmgycvaaaavtgkpviavegdsafgfsgmeleticrynlpvtviimnng
giykgneadpqpgvisctrltrgrydmmmeafggkgyvantpaelkaaleeavasgkpcl
inamidpdagvesgrikslnvvskvgkk

    Sequence, based on observed residues (ATOM records): (download) 
    >2ji6B (B:)
veltdgfhvlidalkmndidtmygvvgipitnlarmwqddgqrfysfrheqhagyaasia
gyiegkpgvcltvsapgflngvtslahattncfpmillsgssereivdlqqgdyeemdqm
nvarphckasfrinsikdipigiaravrtavsgrpggvyvdlpaklfgqtisveeankll
fkpidpapaqipaedaiaraadliknakrpvimlgkgaayaqcddeiralveetgipflp
mgmakgllpdnhpqsaaatrafalaqcdvcvligarlnwlmqhgkgktwgdelkkyvqid
iqanemdsnqpiaapvvgdiksavsllrkalkgapkadaewtgalkakvdgnkaklagkm
taetpsgmmnysnslgvvrdfmlanpdislvneganaldntrmivdmlkprkrldsgtwg
vmgigmgycvaaaavtgkpviavegdsafgfsgmeleticrynlpvtviimnnggiykgn
eadpqpgvisctrltrgrydmmmeafggkgyvantpaelkaaleeavasgkpclinamid
pdagvesgrikslnvvskv