PDB entry 2jeg

View 2jeg on RCSB PDB site
Description: the molecular basis of selectivity of nucleoside triphosphate incorporation opposite o6-benzylguanine by sulfolobus solfataricus DNA polymerase IV: steady-state and pre-steady-state kinetics and x-ray crystallography of correct and incorrect pairing
Class: transferase
Keywords: DNA replication, mutator protein, 06-benzylguanine, nucleotidyltransferase, DNA-directed DNA polymerase, dpo4, magnesium, polymerase, DNA damage, DNA repair, alkylating agents, translesion synthesis, transferase, DNA-binding, metal-binding
Deposited on 2007-01-17, released 2007-03-13
The last revision prior to the SCOP 1.75 freeze date was dated 2007-03-27, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.38 Å
R-factor: 0.226
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase IV
    Species: SULFOLOBUS SOLFATARICUS
    Database cross-references and differences (RAF-indexed):
    • PDB 2JEG (6-23)
    • Uniprot Q97W02 (6-End)
    Domains in SCOP 1.75: d2jega1, d2jega2
  • Chain 'P':
    Compound: 5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap *tp*tp*cp*doc)-3'
  • Chain 'T':
    Compound: 5'-d(*tp*cp*ap*c bzgp*gp*ap*ap*tp*cp *cp*tp*tp*cp*cp*cp*cp*c)-3'
  • Heterogens: CA, DGT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2jegA (A:)
    hhhhhhmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfg
    vkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdk
    vrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrl
    ireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeyn
    epirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedld
    ivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
    

    Sequence, based on observed residues (ATOM records): (download)
    >2jegA (A:)
    hmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagi
    piveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyr
    eaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireld
    iadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirt
    rvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrg
    rtfphgisketaysesvkllqkileederkirrigvrfskfie
    

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.