PDB entry 2jd5

View 2jd5 on RCSB PDB site
Description: sky1p bound to npl3p-derived substrate peptide
Class: transferase
Keywords: mRNA export protein, serine/threonine-protein kinase, kinase, transferase, ATP-binding, nucleotide-binding
Deposited on 2007-01-04, released 2007-02-06
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.21
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: serine/threonine-protein kinase sky1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q03656 (169-End)
      • conflict (6)
      • conflict (167)
    Domains in SCOPe 2.03: d2jd5a_
  • Chain 'B':
    Compound: serine/threonine-protein kinase sky1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q03656 (169-End)
      • conflict (167)
    Domains in SCOPe 2.03: d2jd5b_
  • Chain 'C':
    Compound: npl3p
    Database cross-references and differences (RAF-indexed):
    • PDB 2JD5 (0-End)
  • Heterogens: MG, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2jd5A (A:)
dyrpggfhpafkgepykdaryilvrklgwghfstvwlakdmvnnthvamkivrgdkvyte
aaedeikllqrvndadntkedsmganhilklldhfnhkgpngvhvvmvfevlgenllali
kkyehrgipliyvkqiskqlllgldymhrrcgiihtdikpenvlmeivdspenliqikia
dlgnacwydehytnsiqtreyrspevllgapwgcgadiwstaclifelitgdflfepdeg
hsytkdddhiaqiiellgelpsyllrngkytrtffnsrgllrnisklkfwpledvlteky
kfskdeakeisdflspmlqldprkradagglvnhpwlkdtlgmeeirvpdrelygsgsdi
pgwfeevrdhkrh

    Sequence, based on observed residues (ATOM records): (download) 
    >2jd5A (A:)
fhpafkgepykdaryilvrklgwghfstvwlakdmvnnthvamkivrgdkvyteaaedei
kllqrvndadntkedsmganhilklldhfnhkgpngvhvvmvfevlgenllalikkyehr
gipliyvkqiskqlllgldymhrrcgiihtdikpenvlmeivdspenliqikiadlgnac
wydehytnsiqtreyrspevllgapwgcgadiwstaclifelitgdflftkdddhiaqii
ellgelpsyllrngkytrtffnsllrnisklkfwpledvltekykfskdeakeisdflsp
mlqldprkradagglvnhpwlkdtlgmeeirvpdrelygsgsdipgwfeevrd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2jd5B (B:)
dyrpggfhpafkgepykdaryilvrklgwghfstvwlakdmvnnthvamkivrgdkvyte
aaedeikllqrvndadntkedsmganhilklldhfnhkgpngvhvvmvfevlgenllali
kkyehrgipliyvkqiskqlllgldymhrrcgiihtdikpenvlmeivdspenliqikia
dlgnacwydehytnsiqtreyrspevllgapwgcgadiwstaclifelitgdflfepdeg
hsytkdddhiaqiiellgelpsyllrngkytrtffnsrgllrnisklkfwpledvlteky
kfskdeakeisdflspmlqldprkradagglvnhpwlkdtlgmeeirvpdrelygsgsdi
pgwfeevrdhkrh

    Sequence, based on observed residues (ATOM records): (download) 
    >2jd5B (B:)
pafkgepykdaryilvrklgwghfstvwlakdmvnnthvamkivrgdkvyteaaedeikl
lqrvndadntkedsmganhilklldhfnhkgpngvhvvmvfevlgenllalikkyehrgi
pliyvkqiskqlllgldymhrrcgiihtdikpenvlmeivdspenliqikiadlgnacwy
dehytnsiqtreyrspevllgapwgcgadiwstaclifelitgdflfepdeghsytkddd
hiaqiiellgelpsyllrngkytrtffnsrgllrnisklkfwpledvltekykfskdeak
eisdflspmlqldprkradagglvnhpwlkdtlgmeeirvpdrelygsgsdipgwfeevr

  • Chain 'C':
    No sequence available.