PDB entry 2jaf

View 2jaf on RCSB PDB site
Description: Ground state of halorhodopsin T203V
Class: membrane protein
Keywords: chromophore, chloride pump, ion transport, membrane, chloride, receptor, ion pump, transport, sensory transduction, photoreceptor protein, transmembrane, retinal protein, membrane protein
Deposited on 2006-11-28, released 2006-12-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: halorhodopsin
    Species: Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) [TaxId:478009]
    Gene: hop, OE_1299R
    Database cross-references and differences (RAF-indexed):
    • Uniprot B0R2U4
      • engineered mutation (202)
      • engineered mutation (228)
    Domains in SCOPe 2.08: d2jafa_
  • Heterogens: CL, PLM, BOG, RET, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2jafA (A:)
msitsvpgvvdagvlgaqsaaavrenallssslwvnvalagiailvfvymgrtirpgrpr
liwgatlmiplvsissylgllsgltvgmiempaghalagemvrsqwgryltwalstpmil
lalglladvdlgslftviaadigmcvtglaaamttsallfrwafyaiscaffvvvlsalv
tdwaasassagtaeifdtlrvlvvvlwlgypivwavgveglalvqsvgatswaysvldvf
akyvfafillrwvannertvavagqtlgtmssdd

    Sequence, based on observed residues (ATOM records): (download) 
    >2jafA (A:)
avrenallssslwvnvalagiailvfvymgrtirpgrprliwgatlmiplvsissylgll
sgltvgmiempaghalagemvrsqwgryltwalstpmillalglladvdlgslftviaad
igmcvtglaaamttsallfrwafyaiscaffvvvlsalvtdwaasassagtaeifdtlrv
lvvvlwlgypivwavgveglalvqsvgatswaysvldvfakyvfafillrwvannertva
va