PDB entry 2j9e

View 2j9e on RCSB PDB site
Description: structure of glnk1 with bound effectors indicates regulatory mechanism for ammonia uptake
Class: membrane transport
Keywords: em single particle, nitrogen metabolism, signalling, transcription, membrane transport, hypothetical protein, transcription regulation
Deposited on 2006-11-07, released 2007-01-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-12-22, with a file datestamp of 2009-12-18.
Experiment type: XRAY
Resolution: 1.62 Å
R-factor: 0.144
AEROSPACI score: 0.62 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hypothetical nitrogen regulatory pii-like protein mj0059
    Species: METHANOCOCCUS JANNASCHII [TaxId:2190]
    Database cross-references and differences (RAF-indexed):
    • PDB 2J9E (114-End)
    • Uniprot Q60381 (2-113)
    Domains in SCOPe 2.08: d2j9ea1, d2j9ea2
  • Chain 'B':
    Compound: hypothetical nitrogen regulatory pii-like protein mj0059
    Species: METHANOCOCCUS JANNASCHII [TaxId:2190]
    Database cross-references and differences (RAF-indexed):
    • PDB 2J9E (114-118)
    • Uniprot Q60381 (2-113)
    Domains in SCOPe 2.08: d2j9eb1, d2j9eb2
  • Chain 'C':
    Compound: hypothetical nitrogen regulatory pii-like protein mj0059
    Species: METHANOCOCCUS JANNASCHII [TaxId:2190]
    Database cross-references and differences (RAF-indexed):
    • PDB 2J9E (114-End)
    • Uniprot Q60381 (2-113)
    Domains in SCOPe 2.08: d2j9ec1, d2j9ec2
  • Heterogens: ATP, ACT, CL, NA, MG, AKG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2j9eA (A:)
gsmkkveaiirpekleivkkalsdagyvgmtvsevkgrgvqggiveryrgreyivdlipk
vkielvvkeedvdnvidiicenartgnpgdgkifvipvervvrvrtkeegkeallehhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2j9eA (A:)
gsmkkveaiirpekleivkkalsdagyvgmtvsevkgrgvqggiveryyivdlipkvkie
lvvkeedvdnvidiicenartgnpgdgkifvipvervvrvrtkeegkealle

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2j9eB (B:)
gsmkkveaiirpekleivkkalsdagyvgmtvsevkgrgvqggiveryrgreyivdlipk
vkielvvkeedvdnvidiicenartgnpgdgkifvipvervvrvrtkeegkeallehhh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2j9eC (C:)
gsmkkveaiirpekleivkkalsdagyvgmtvsevkgrgvqggiveryrgreyivdlipk
vkielvvkeedvdnvidiicenartgnpgdgkifvipvervvrvrtkeegkeallehhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2j9eC (C:)
gsmkkveaiirpekleivkkalsdagyvgmtvsevkgrgvqggiveryrgreyivdlipk
vkielvvkeedvdnvidiicenartgnpgdgkifvipvervvrvrtkeegkealle