SCOPe 2.08: Structural Classification of Proteins

PDB entry 2j9d

View 2j9d on RCSB PDB site
Description: structure of glnk1 with bound effectors indicates regulatory mechanism for ammonia uptake
Class: membrane transport
Keywords: em single particle, nitrogen metabolism, signalling, transcription, membrane transport, hypothetical protein, transcription regulation
Deposited on 2006-11-07, released 2007-01-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.21
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: hypothetical nitrogen regulatory pii-like protein mj0059
Species: METHANOCOCCUS JANNASCHII [TaxId:2190]
Database cross-references and differences (RAF-indexed):
- PDB 2J9D (114-116)
  - conflict (114)
- Uniprot Q60381 (2-113)
Domains in SCOPe 2.08: d2j9da1, d2j9da2
Chain 'B':
Compound: hypothetical nitrogen regulatory pii-like protein mj0059
Species: METHANOCOCCUS JANNASCHII [TaxId:2190]
Database cross-references and differences (RAF-indexed):
- PDB 2J9D (114-End)
  - conflict (114)
- Uniprot Q60381 (2-113)
Domains in SCOPe 2.08: d2j9db1, d2j9db2
Chain 'C':
Compound: hypothetical nitrogen regulatory pii-like protein mj0059
Species: METHANOCOCCUS JANNASCHII [TaxId:2190]
Database cross-references and differences (RAF-indexed):
- PDB 2J9D (114-End)
  - conflict (114)
- Uniprot Q60381 (2-113)
Domains in SCOPe 2.08: d2j9dc1, d2j9dc2
Chain 'D':
Compound: hypothetical nitrogen regulatory pii-like protein mj0059
Species: METHANOCOCCUS JANNASCHII [TaxId:2190]
Database cross-references and differences (RAF-indexed):
- PDB 2J9D (114-116)
  - conflict (114)
- Uniprot Q60381 (2-113)
Domains in SCOPe 2.08: d2j9dd1, d2j9dd2
Chain 'E':
Compound: hypothetical nitrogen regulatory pii-like protein mj0059
Species: METHANOCOCCUS JANNASCHII [TaxId:2190]
Domains in SCOPe 2.08: d2j9de_
Chain 'F':
Compound: hypothetical nitrogen regulatory pii-like protein mj0059
Species: METHANOCOCCUS JANNASCHII [TaxId:2190]
Database cross-references and differences (RAF-indexed):
- PDB 2J9D (114-End)
  - conflict (114)
- Uniprot Q60381 (2-113)
Domains in SCOPe 2.08: d2j9df1, d2j9df2
Chain 'G':
Compound: hypothetical nitrogen regulatory pii-like protein mj0059
Species: METHANOCOCCUS JANNASCHII [TaxId:2190]
Database cross-references and differences (RAF-indexed):
- PDB 2J9D (114-End)
  - conflict (114)
- Uniprot Q60381 (2-113)
Domains in SCOPe 2.08: d2j9dg1, d2j9dg2
Chain 'H':
Compound: hypothetical nitrogen regulatory pii-like protein mj0059
Species: METHANOCOCCUS JANNASCHII [TaxId:2190]
Database cross-references and differences (RAF-indexed):
- PDB 2J9D
- Uniprot Q60381 (2-113)
Domains in SCOPe 2.08: d2j9dh_
Chain 'I':
Compound: hypothetical nitrogen regulatory pii-like protein mj0059
Species: METHANOCOCCUS JANNASCHII [TaxId:2190]
Database cross-references and differences (RAF-indexed):
- PDB 2J9D (114-End)
  - conflict (114)
- Uniprot Q60381 (2-113)
Domains in SCOPe 2.08: d2j9di1, d2j9di2
Chain 'J':
Compound: hypothetical nitrogen regulatory pii-like protein mj0059
Species: METHANOCOCCUS JANNASCHII [TaxId:2190]
Database cross-references and differences (RAF-indexed):
- PDB 2J9D (114-End)
  - conflict (114)
- Uniprot Q60381 (2-113)
Domains in SCOPe 2.08: d2j9dj1, d2j9dj2
Chain 'K':
Compound: hypothetical nitrogen regulatory pii-like protein mj0059
Species: METHANOCOCCUS JANNASCHII [TaxId:2190]
Database cross-references and differences (RAF-indexed):
- PDB 2J9D (114-End)
  - conflict (114)
- Uniprot Q60381 (2-113)
Domains in SCOPe 2.08: d2j9dk1, d2j9dk2
Chain 'L':
Compound: hypothetical nitrogen regulatory pii-like protein mj0059
Species: METHANOCOCCUS JANNASCHII [TaxId:2190]
Database cross-references and differences (RAF-indexed):
- PDB 2J9D (114-End)
  - conflict (114)
- Uniprot Q60381 (2-113)
Domains in SCOPe 2.08: d2j9dl1, d2j9dl2
Heterogens: ACT, ADP, AMP, CL, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>2j9dA (A:)
gsmkkveaiirpekleivkkalsdagyvgmtvsevkgrgvqggiveryrgreyivdlipk
vkielvvkeedvdnvidiicenartgnpgdgkifvipvervvrvrtkeegkeallehhh