PDB entry 2j6j

View 2j6j on RCSB PDB site
Description: prefusion form of the vesicular stomatitis virus glycoprotein g ectodomain
Class: viral protein
Keywords: virion protein, membrane protein, envelope protein, transmembrane fusion, viral protein
Deposited on 2006-09-29, released 2007-02-06
Made obsolete by 5i2s on 2016-03-02

The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-31.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.223
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein
    Species: VESICULAR STOMATITIS INDIANA VIRUS [TaxId:11277]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2j6ja_
  • Heterogens: NAG, YB

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2j6jA (A:)
kftivfphnqkgnwknvpsnyhycpsssdlnwhndligtaiqvkmpkshkaiqadgwmch
askwvttcdfrwygpkyitqsirsftpsveqckesieqtkqgtwlnpgfppqscgyatvt
daeavivqvtphhvlvdeytgewvdsqfingkcsnyicptvhnsttwhsdykvkglcdsn
lismditffsedgelsslgkegtgfrsnyfayetggkackmqyckhwgvrlpsgvwfema
dkdlfaaarfpecpegssisapsqtsvdvsliqdverildyslcqetwskiraglpispv
dlsylapknpgtgpaftiingtlkyfetryirvdiaapilsrmvgmisgttterelwddw
apyedveigpngvlrtssgykfplymighgmldsdlhlsskaqvfehphiqdaasqlpdd
es

    Sequence, based on observed residues (ATOM records): (download) 
    >2j6jA (A:)
kftivfphnqkgnwknvpsnyhycpsssdlnwhndligtaiqvkmpkshkaiqadgwmch
askwvttcdfrwygpkyitqsirsftpsveqckesieqtkqgtwlnpgfppqscgyatvt
daeavivqvtphhvlvdeytgewvdsqfingkcsnyicptvhnsttwhsdykvkglcdsn
lismditffsedgelsslgkegtgfrsnyfayetggkackmqyckhwgvrlpsgvwfema
dkdlfaaarfpecpegssisapsqtsvdvsliqdverildyslcqetwskiraglpispv
dlsylapknpgtgpaftiingtlkyfetryirvdiaapilsrmvgmisgttterelwddw
apyedveigpngvlrtssgykfplymighgmldsdlhlsskaqvfehphiqda