PDB entry 2j6e
View 2j6e on RCSB PDB site
Description: crystal structure of an autoimmune complex between a human igm rheumatoid factor and igg1 fc reveals a novel fc epitope and evidence for affinity maturation
Class: immune system
Keywords: autoimmune complex human igm rheumatoid factor igg1-fc, immunoglobulin c region, membrane, glycoprotein, transmembrane, hypothetical protein, immune system, immunoglobulin domain
Deposited on
2006-09-28, released
2007-04-10
The last revision prior to the SCOP 1.73 freeze date was dated
2007-04-10, with a file datestamp of
2007-06-28.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.223
AEROSPACI score: 0.18
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ig gamma-1 chain C region
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d2j6ea1, d2j6ea2 - Chain 'B':
Compound: Ig gamma-1 chain C region
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d2j6eb1, d2j6eb2 - Chain 'H':
Compound: igm
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
- Chain 'I':
Compound: igm
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: igm
Species: HOMO SAPIENS
- Chain 'M':
Compound: igm
Species: HOMO SAPIENS
- Heterogens: CD, ZN, CAC, ACT, MPD, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2j6eA (A:)
epkscdkthtcppcpapellggpsvflfppkpkdtlmisrtpevtcvvvdvsheepevkf
nwyvdgvevhnaktkpreeqynstyrvvsvltvlhqdwlngkeykckvsnkalpapiekt
iskakgqprepqvytlppsrdeltknqvsltclvkgfypsdiavewesngqpennykttp
pvldsdgsfflyskltvdksrwqqgnvfscsvmhealhnhytqkslslspgk
Sequence, based on observed residues (ATOM records): (download)
>2j6eA (A:)
ggpsvflfppkpkdtlmisrtpevtcvvvdvsheepevkfnwyvdgvevhnaktkpreeq
ynstyrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlppsr
deltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvdks
rwqqgnvfscsvmhealhnhytqkslslsp
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2j6eB (B:)
epkscdkthtcppcpapellggpsvflfppkpkdtlmisrtpevtcvvvdvsheepevkf
nwyvdgvevhnaktkpreeqynstyrvvsvltvlhqdwlngkeykckvsnkalpapiekt
iskakgqprepqvytlppsrdeltknqvsltclvkgfypsdiavewesngqpennykttp
pvldsdgsfflyskltvdksrwqqgnvfscsvmhealhnhytqkslslspgk
Sequence, based on observed residues (ATOM records): (download)
>2j6eB (B:)
psvflfppkpkdtlmisrtpevtcvvvdvsheepevkfnwyvdgvevhnaktkpreeqyn
styrvvsvltvlhqdwlngkeykckvsnkalpapiektiskakgqprepqvytlppsrde
ltknqvsltclvkgfypsdiavewesngqpennykttppvldsdgsfflyskltvdksrw
qqgnvfscsvmhealhnhytqkslslspg
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.
- Chain 'L':
No sequence available.
- Chain 'M':
No sequence available.