PDB entry 2j61

View 2j61 on RCSB PDB site
Description: L-ficolin complexed to N-acetylglucosamine (forme C)
Class: lectin
Keywords: glycoprotein, ficrinogen-like, innate immunity, pattern recognition protein, lectin, collagen, immunology, lectin- like
Deposited on 2006-09-21, released 2007-01-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ficolin-2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2J61
      • conflict (97)
      • conflict (115)
      • conflict (176)
    • Uniprot Q15485 (Start-217)
    Domains in SCOPe 2.08: d2j61a_
  • Chain 'B':
    Compound: ficolin-2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2J61
      • conflict (97)
      • conflict (176)
    • Uniprot Q15485 (Start-217)
    Domains in SCOPe 2.08: d2j61b_
  • Heterogens: CA, NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2j61A (A:)
npcltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdf
yrdwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfrvade
aekynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnl
ngrylrgthgsfanginwksgkgynysykvsemkvrpa

    Sequence, based on observed residues (ATOM records): (download) 
    >2j61A (A:)
cltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdfyr
dwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfrvadeae
kynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnlng
rylrgthgsfanginwksgkgynysykvsemkvrpa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2j61B (B:)
npcltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdf
yrdwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvade
aekynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnl
ngrylrgthgsfanginwksgkgynysykvsemkvrpa

    Sequence, based on observed residues (ATOM records): (download) 
    >2j61B (B:)
cltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdfyr
dwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvadeae
kynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnlng
rylrgthgsfanginwksgkgynysykvsemkvrpa