PDB entry 2j5z

View 2j5z on RCSB PDB site
Description: H-ficolin complexed to galactose
Class: lectin
Keywords: hydroxylation, lectin, collagen, immunology, glycoprotein
Deposited on 2006-09-21, released 2007-01-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.73 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ficolin-3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2j5za_
  • Chain 'B':
    Compound: ficolin-3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2j5zb_
  • Chain 'C':
    Compound: ficolin-3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2j5zc_
  • Heterogens: CA, GAL, ACT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2j5zA (A:)
    dlvnllrcqegprncrellsqgatlsgwyhlclpegralpvfcdmdtegggwlvfqrrqd
    gsvdffrswssyragfgnqesefwlgnenlhqltlqgnwelrveledfngnrtfahyatf
    rllgevdhyqlalgkfsegtagdslslhsgrpfttydadhdssnsncavivhgawwyasc
    yrsnlngryavseaaahkygidwasgrgvghpyrrvrmmlr
    

    Sequence, based on observed residues (ATOM records): (download)
    >2j5zA (A:)
    cqegprncrellsqgatlsgwyhlclpegralpvfcdmdtegggwlvfqrrqdgsvdffr
    swssyragfgnqesefwlgnenlhqltlqgnwelrveledfngnrtfahyatfrllgevd
    hyqlalgkfsegtagdslslhsgrpfttydadhdssnsncavivhgawwyascyrsnlng
    ryavseaaahkygidwasgrgvghpyrrvrmmlr
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2j5zB (B:)
    dlvnllrcqegprncrellsqgatlsgwyhlclpegralpvfcdmdtegggwlvfqrrqd
    gsvdffrswssyragfgnqesefwlgnenlhqltlqgnwelrveledfngnrtfahyatf
    rllgevdhyqlalgkfsegtagdslslhsgrpfttydadhdssnsncavivhgawwyasc
    yrsnlngryavseaaahkygidwasgrgvghpyrrvrmmlr
    

    Sequence, based on observed residues (ATOM records): (download)
    >2j5zB (B:)
    gprncrellsqgatlsgwyhlclpegralpvfcdmdtegggwlvfqrrqdgsvdffrsws
    syragfgnqesefwlgnenlhqltlqgnwelrveledfngnrtfahyatfrllgevdhyq
    lalgkfsegtagdslslhsgrpfttydadhdssnsncavivhgawwyascyrsnlngrya
    vseaaahkygidwasgrgvghpyrrvrmmlr
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2j5zC (C:)
    dlvnllrcqegprncrellsqgatlsgwyhlclpegralpvfcdmdtegggwlvfqrrqd
    gsvdffrswssyragfgnqesefwlgnenlhqltlqgnwelrveledfngnrtfahyatf
    rllgevdhyqlalgkfsegtagdslslhsgrpfttydadhdssnsncavivhgawwyasc
    yrsnlngryavseaaahkygidwasgrgvghpyrrvrmmlr
    

    Sequence, based on observed residues (ATOM records): (download)
    >2j5zC (C:)
    gprncrellsqgatlsgwyhlclpegralpvfcdmdtegggwlvfqrrqdgsvdffrsws
    syragfgnqesefwlgnenlhqltlqgnwelrveledfngnrtfahyatfrllgevdhyq
    lalgkfsegtagdslslhsgrpfttydadhdssnsncavivhgawwyascyrsnlngrya
    vseaaahkygidwasgrgvghpyrrvrmmlr