PDB entry 2j5r

View 2j5r on RCSB PDB site
Description: 2.25 a resolution structure of the wild type malate dehydrogenase from haloarcula marismortui after second radiation burn (radiation damage series)
Class: oxidoreductase
Keywords: nad, halophile, oxidoreductase, radiation damage, malate dehydrogenase, tricarboxylic acid cycle
Deposited on 2006-09-19, released 2006-09-21
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: 0.2199
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: malate dehydrogenase
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2j5ra1, d2j5ra2
  • Chain 'B':
    Compound: malate dehydrogenase
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2j5rb1, d2j5rb2
  • Chain 'C':
    Compound: malate dehydrogenase
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2j5rc1, d2j5rc2
  • Chain 'D':
    Compound: malate dehydrogenase
    Species: HALOARCULA MARISMORTUI [TaxId:2238]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2j5rd1, d2j5rd2
  • Heterogens: CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2j5rA (A:)
mtkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntr
vrqggyedtagsdvvvitagiprqpgqtridlagdnapimediqssldehnddyisltts
npvdllnrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaq
vpvfskvrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhd
tgevlpasvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqy
dkis

    Sequence, based on observed residues (ATOM records): (download) 
    >2j5rA (A:)
tkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntrv
rqggyedtagsdvvvitagiprqpgqtridlagdnapimediqssldehnddyislttsn
pvdllnrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaqv
pvfskvrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhdt
gevlpasvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqyd
kis

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2j5rB (B:)
mtkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntr
vrqggyedtagsdvvvitagiprqpgqtridlagdnapimediqssldehnddyisltts
npvdllnrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaq
vpvfskvrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhd
tgevlpasvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqy
dkis

    Sequence, based on observed residues (ATOM records): (download) 
    >2j5rB (B:)
tkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntrv
rqggyedtagsdvvvitagiqtridlagdnapimediqssldehnddyislttsnpvdll
nrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaqvpvfsk
vrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhdtgevlp
asvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqydkis

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2j5rC (C:)
mtkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntr
vrqggyedtagsdvvvitagiprqpgqtridlagdnapimediqssldehnddyisltts
npvdllnrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaq
vpvfskvrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhd
tgevlpasvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqy
dkis

    Sequence, based on observed residues (ATOM records): (download) 
    >2j5rC (C:)
tkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntrv
rqggyedtagsdvvvitagiprqpgqtridlagdnapimediqssldehnddyislttsn
pvdllnrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaqv
pvfskvrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhdt
gevlpasvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqyd
kis

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2j5rD (D:)
mtkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntr
vrqggyedtagsdvvvitagiprqpgqtridlagdnapimediqssldehnddyisltts
npvdllnrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaq
vpvfskvrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhd
tgevlpasvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqy
dkis

    Sequence, based on observed residues (ATOM records): (download) 
    >2j5rD (D:)
tkvsvvgaagtvgaaagynialrdiadevvfvdipdkeddtvgqaadtnhgiaydsntrv
rqggyedtagsdvvvitagiqtridlagdnapimediqssldehnddyislttsnpvdll
nrhlyeagdrsreqvigfggrldsarfryvlseefdapvqnvegtilgehgdaqvpvfsk
vrvdgtdpefsgdekeqllgdlqesamdvierkgatewgpargvahmveailhdtgevlp
asvklegefghedtafgvpvrlgsngveeivewdlddyeqdlmadaaeklsdqydkis