SCOPe 2.08: Structural Classification of Proteins

PDB entry 2j28

View 2j28 on RCSB PDB site
Description: model of e. coli srp bound to 70s rncs
Class: ribosome
Keywords: ribosome, protein-RNA complex, signal recognition particle
Deposited on 2006-08-16, released 2006-11-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-10-03, with a file datestamp of 2018-09-28.
Experiment type: EM
Resolution: 8 Å
R-factor: N/A
AEROSPACI score: -0.12 (click here for full SPACI score report)

Chains and heterogens:

Chain '0':
Compound: 50S ribosomal protein L32
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7N4 (0-55)
Domains in SCOPe 2.08: d2j2801
Chain '1':
Compound: 50S ribosomal protein L33
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7N9 (0-53)
Domains in SCOPe 2.08: d2j2811
Chain '2':
Compound: 50S ribosomal protein L34
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7P5 (0-45)
Domains in SCOPe 2.08: d2j2821
Chain '3':
Compound: 50S ribosomal protein L35
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7Q2 (0-63)
Domains in SCOPe 2.08: d2j2831
Chain '4':
Compound: 50S ribosomal protein L36
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7Q6 (0-37)
Domains in SCOPe 2.08: d2j2841
Chain '7':
Compound: signal sequence
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- PDB 2J28 (0-17)
Chain '8':
Compound: 4.5s signal recognition particle RNA
Species: Escherichia coli [TaxId:562]
Chain '9':
Compound: signal recognition particle 54
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0AGD7 (0-429)
Chain 'A':
Compound: 5S ribosomal RNA
Species: Escherichia coli [TaxId:562]
Chain 'B':
Compound: 23S ribosomal RNA
Species: Escherichia coli [TaxId:562]
Chain 'C':
Compound: 50S ribosomal protein L2
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P60422 (0-266)
Domains in SCOPe 2.08: d2j28c1, d2j28c2
Chain 'D':
Compound: 50S ribosomal protein L3
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P60438 (0-208)
Domains in SCOPe 2.08: d2j28d1
Chain 'E':
Compound: 50S ribosomal protein L4
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P60723 (0-200)
Domains in SCOPe 2.08: d2j28e1
Chain 'F':
Compound: 50S ribosomal protein L5
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P62399 (0-177)
Domains in SCOPe 2.08: d2j28f1
Chain 'G':
Compound: 50S ribosomal protein L6
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0AG55 (0-175)
Domains in SCOPe 2.08: d2j28g1, d2j28g2
Chain 'H':
Compound: 50S ribosomal protein L9
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7R1 (0-148)
Domains in SCOPe 2.08: d2j28h1, d2j28h2
Chain 'I':
Compound: 50S ribosomal protein L11
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7J7 (0-140)
Domains in SCOPe 2.08: d2j28i1, d2j28i2
Chain 'J':
Compound: 50S ribosomal protein L13
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0AA10 (0-139)
Domains in SCOPe 2.08: d2j28j1
Chain 'K':
Compound: 50S ribosomal protein L14
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0ADY3 (0-120)
Domains in SCOPe 2.08: d2j28k1
Chain 'L':
Compound: 50S ribosomal protein L15
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P02413 (0-143)
Domains in SCOPe 2.08: d2j28l1
Chain 'M':
Compound: 50S ribosomal protein L16
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0ADY7 (0-135)
Domains in SCOPe 2.08: d2j28m1
Chain 'N':
Compound: 50S ribosomal protein L17
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0AG44 (0-126)
Domains in SCOPe 2.08: d2j28n1
Chain 'O':
Compound: 50S ribosomal protein L18
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0C018 (0-116)
Domains in SCOPe 2.08: d2j28o1
Chain 'P':
Compound: 50S ribosomal protein L19
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7K6 (0-113)
Domains in SCOPe 2.08: d2j28p1
Chain 'Q':
Compound: 50S ribosomal protein L20
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7L3 (0-116)
Domains in SCOPe 2.08: d2j28q1
Chain 'R':
Compound: 50S ribosomal protein L21
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0AG48 (0-102)
Domains in SCOPe 2.08: d2j28r1
Chain 'S':
Compound: 50S ribosomal protein L22
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P61175 (0-109)
Domains in SCOPe 2.08: d2j28s1
Chain 'T':
Compound: 50S ribosomal protein L23
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0ADZ0 (0-98)
Domains in SCOPe 2.08: d2j28t1
Chain 'U':
Compound: 50S ribosomal protein L24
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P60624 (0-101)
Domains in SCOPe 2.08: d2j28u1
Chain 'V':
Compound: 50S ribosomal protein L25
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P68919 (0-93)
Domains in SCOPe 2.08: d2j28v1
Chain 'W':
Compound: 50S ribosomal protein L27
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7L8 (0-83)
Domains in SCOPe 2.08: d2j28w1
Chain 'X':
Compound: 50S ribosomal protein L29
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7M6 (0-62)
Domains in SCOPe 2.08: d2j28x1
Chain 'Y':
Compound: 50S ribosomal protein L30
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0AG51 (0-57)
Domains in SCOPe 2.08: d2j28y1
Chain 'Z':
Compound: 50S ribosomal protein L31
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
- Uniprot P0A7M9 (0-69)
Domains in SCOPe 2.08: d2j28z1
Heterogens: MG, HOH

PDB Chain Sequences:

Chain '0':
Sequence; same for both SEQRES and ATOM records: (download)

>2j280 (0:)
avqqnkptrskrgmrrshdaltavtslsvdktsgekhlrhhitadgyyrgrkviak

Chain '1':
Sequence; same for both SEQRES and ATOM records: (download)

>2j281 (1:)
akgirekiklvssagtghfytttknkrtkpeklelkkfdpvvrqhviykeakik

Chain '2':
Sequence; same for both SEQRES and ATOM records: (download)
```
>2j282 (2:)
mkrtfqpsvlkrnrshgfrarmatkngrqvlarrrakgrarltvsk
```

Chain '3':
Sequence; same for both SEQRES and ATOM records: (download)

>2j283 (3:)
pkiktvrgaakrfkktgkggfkhkhanlrhiltkkatkrkrhlrpkamvskgdlglviac
lpya

Chain '4':
Sequence; same for both SEQRES and ATOM records: (download)
```
>2j284 (4:)
mkvrasvkklcrnckivkrdgvirvicsaepkhkqrqg
```
Chain '7':
No sequence available.
Chain '8':
No sequence available.
Chain '9':
No sequence available.
Chain 'A':
No sequence available.
Chain 'B':
No sequence available.

Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28C (C:)
vkckptspgrrhvvkvvnpelhkgkpfaplleknsksggrnnngrittrhiggghkqayr
ivdfkrnkdgipavverleydpnrsanialvlykdgerryilapkglkagdqiqsgvdaa
ikpgntlpmrnipvgstvhnvemkpgkggqlarsagtyvqivardgayvtlrlrsgemrk
veadcratlgevgnaehmlrvlgkagaarwrgvrptvrgtamnpvdhphgggegrnfgkh
pvtpwgvqtkgkktrsnkrtdkfivrr

Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28D (D:)
miglvgkkvgmtriftedgvsipvtvieveanrvtqvkdlandgyraiqvttgakkanrv
tkpeaghfakagveagrglwefrlaegeeftvgqsisvelfadvkkvdvtgtskgkgfag
tvkrwnfrtqdathgnslshrvpgsigqnqtpgkvfkgkkmagqmgnervtvqsldvvrv
daernlllvkgavpgatgsdlivkpavka

Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28E (E:)
melvlkdaqsaltvsettfgrdfnealvhqvvvayaagarqgtraqktraevtgsgkkpw
rqkgtgrarsgsikspiwrsggvtfaarpqdhsqkvnkkmyrgalksilselvrqdrliv
vekfsveapktkllaqklkdmaledvliitgeldenlflaarnlhkvdvrdatgidpvsl
iafdkvvmtadavkqveemla

Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28F (F:)
aklhdyykdevvkklmtefnynsvmqvprvekitlnmgvgeaiadkklldnaaadlaais
gqkplitkarksvagfkirqgypigckvtlrgermwefferlitiavprirdfrglsaks
fdgrgnysmgvreqiifpeidydkvdrvrgldititttaksdeegrallaafdfpfrk

Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28G (G:)
srvakapvvvpagvdvkingqvitikgkngeltrtlndavevkhadntltfgprdgyadg
waqagtarallnsmvigvtegftkklqlvgvgyraavkgnvinlslgfshpvdhqlpagi
taecptqteivlkgadkqvigqvaadlrayrrpepykgkgvryadevvrtkeakkk

Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28H (H:)
mqvilldkvanlgslgdqvnvkagyarnflvpqgkavpatkknieffearraeleaklae
vlaaanaraekinaletvtiaskagdegklfgsigtrdiadavtaagvevaksevrlpng
vlrttgehevsfqvhsevfakvivnvvae

Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28I (I:)
akkvqayvklqvaagmanpsppvgpalgqqgvnimefckafnaktdsiekglpipvvitv
yadrsftfvtktppaavllkkaagiksgsgkpnkdkvgkisraqlqeiaqtkaadmtgad
ieamtrsiegtarsmglvved

Chain 'J':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28J (J:)
mktftakpetvkrdwyvvdatgktlgrlatelarrlrgkhkaeytphvdtgdyiivlnad
kvavtgnkrtdkvyyhhtghiggikqatfeemiarrpervieiavkgmlpkgplgramfr
klkvyagnehnhaaqqpqvl

Chain 'K':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28K (K:)
iqeqtmlnvadnsgarrvmcikvlggshrryagvgdiikitikeaiprgkvkkgdvlkav
vvrtkkgvrrpdgsvirfdgnacvllnnnseqpigtrifgpvtrelrsekfmkiislape
v

Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28L (L:)
mrlntlspaegskkagkrlgrgigsglgktggrghkgqksrsgggvrrgfeggqmplyrr
lpkfgftsrkaaitaeirlsdlakveggvvdlntlkaaniigiqiefakvilagevttpv
tvrglrvtkgaraaieaaggkiee

Chain 'M':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28M (M:)
mlqpkrtkfrkmhkgrnrglaqgtdvsfgsfglkavgrgrltarqieaarramtravkrq
gkiwirvfpdkpitekplavrmgkgkgnveywvaliqpgkvlyemdgvpeelareafkla
aaklpikttfvtktvm

Chain 'N':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28N (N:)
mrhrksgrqlnrnsshrqamfrnmagslvrheiikttlpkakelrrvveplitlaktdsv
anrrlafartrdneivaklfnelgprfasraggytrilkcgfragdnapmayielvdrse
kaeaaae

Chain 'O':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28O (O:)
mdkksarirratrarrklqelgatrlvvhrtprhiyaqviapngsevlvaastvekaiae
qlkytgnkdaaaavgkavaeralekgikdvsfdrsgfqyhgrvqaladaareaglqf

Chain 'P':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28P (P:)
sniikqleqeqmkqdvpsfrpgdtvevkvwvvegskkrlqafegvviairnrglhsaftv
rkisngegvervfqthspvvdsisvkrrgavrkaklyylrertgkaarikerln

Chain 'Q':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28Q (Q:)
arvkrgviararhkkilkqakgyygarsrvyrvafqavikagqyayrdrrqrkrqfrqlw
iarinaaarqngisyskfinglkkasveidrkiladiavfdkvaftalvekakaala

Chain 'R':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28R (R:)
myavfqsggkqhrvsegqtvrlekldiatgetvefaevlmiangeevkigvpfvdggvik
aevvahgrgekvkivkfrrrkhyrkqqghrqwftdvkitgisa

Chain 'S':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28S (S:)
metiakhrharssaqkvrlvadlirgkkvsqaldiltytnkkaavlvkkvlesaianaeh
ndgadiddlkvtkifvdegpsmkrimprakgradrilkrtshitvvvsdr

Chain 'T':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28T (T:)
mireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevvnt
lvvkgkvkrhgqrigrrsdwkkayvtlkegqnldfvgga

Chain 'U':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28U (U:)
aakirrddevivltgkdkgkrgkvknvlssgkviveginlvkkhqkpvpalnqpggivek
eaaiqvsnvaifnaatgkadrvgfrfedgkkvrffksnseti

Chain 'V':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28V (V:)
mftinaevrkeqgkgasrrlraankfpaiiyggkeaplaieldhdkvmnmqakaefysev
ltivvdgkeikvkaqdvqrhpykpklqhidfvra

Chain 'W':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28W (W:)
ahkkaggstrngrdseakrlgvkrfggesvlagsiivrqrgtkfhaganvgcgrdhtlfa
kadgkvkfevkgpknrkfisieae

Chain 'X':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28X (X:)
mkakelreksveelntellnllreqfnlrmqaasgqlqqshllkqvrrdvarvktllnek
aga

Chain 'Y':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28Y (Y:)
aktikitqtrsaigrlpkhkatllglglrrightveredtpairgminavsfmvkvee

Chain 'Z':
Sequence; same for both SEQRES and ATOM records: (download)

>2j28Z (Z:)
mkkdihpkyeeitascscgnvmkirstvghdlnldvcskchpfftgkqrdvatggrvdrf
nkrfnipgsk