PDB entry 2j0u

View 2j0u on RCSB PDB site
Description: the crystal structure of eif4aiii-barentsz complex at 3.0 a resolution
Class: hydrolase
Keywords: hydrolase, ATP-binding, DNA-binding, nuclear protein, rRNA processing, dead-box helicase, nucleotide-binding, ejc, helicase, RNA-binding, acetylation
Deposited on 2006-08-04, released 2006-09-06
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.276
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP-dependent RNA helicase ddx48
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P38919 (0-End)
      • conflict (56)
      • conflict (84)
      • conflict (340)
      • conflict (350)
      • conflict (99)
      • conflict (187)
    Domains in SCOPe 2.06: d2j0ua1, d2j0ua2
  • Chain 'B':
    Compound: ATP-dependent RNA helicase ddx48
    Species: Homo sapiens [TaxId:9606]
    Domains in SCOPe 2.06: d2j0ub1, d2j0ub2
  • Chain 'T':
    Compound: Protein CASC3
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2j0uA (A:)
ptfdtmglredllrgiyaygfekpsaiqqraikqiikgrdviaqsqsgtgktatfsvsvl
qcldiqvretqalilaptrelavqvqkgllalgdymnvqchaciggtnvgedirkldygq
hvvagtpgrvfdmirrrslrtraikmlvldeademlnkgfkeqiydvyrylppatqvvli
satlpheilemtnkfmtdpirilvkrdeltlegikqffvavereewkfdtlcdlydtlti
tqavifcntkrkvdwltekmreanftvssmhgdmpqkeresimkefrsgasrvlistdvw
argldvpqvsliinydlpnnrelyihrigrsgrygrkgvavnfvknddirvlrdieqyys
tqidempmnvadli

    Sequence, based on observed residues (ATOM records): (download) 
    >2j0uA (A:)
ptfdtmglredllrgiyaygfekpsaiqqraikqiikgrdviaqsqsgtgktatfsvsvl
qcldiqvretqalilaptrelavqvqkgllalgdymnvqchaciggtnvgedirkldygq
hvvagtpgrvfdmirrrslrtraikmlvldeademlnkgfkeqiydvyrylppatqvvli
satlpheilemtnkfmtdpirilvkrdeltlegikqffvavereewkfdtlcdlyditqa
vifcntkrkvdwltekmreanftvssmhgdmpqkeresimkefrsgasrvlistdvward
vpqvsliinydlpnnrelyihrigrsgrygrkgvavnfvknddirvlrdieqyystqide
mpmnva

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2j0uB (B:)
ptfdtmglredllrgiyaygfekpsaiqqraikqiikgrdviaqsqsgtgktatfsvsvl
qcldiqvretqalilaptrelavqvqkgllalgdymnvqshaciggtnvgedirkldygq
hvvagtpgrvfdmirrrslrtraikmlvldeademlnkgfkeqiydvyrylppatqvvli
satlphevlemtnkfmtdpirilvkrdeltlegikqffvavereewkfdtlcdlydtlti
tqavifcntkrkvdwltekmreanftvssmhgdmpqkeresimkefrsgasrvlistdvw
argldvpqvsliinydlpnnrelyihrigrsgrygrkgvavnfvknddirvlrdieqyys
tqidempmnvadli

    Sequence, based on observed residues (ATOM records): (download) 
    >2j0uB (B:)
ptfdtmglredllrgiyaygfekpsaiqqraikqiikgrdviaqsqsgtgktatfsvsvl
qcldiqvretqalilaptrelavqvqkgllalgdymnvqshacigedirkldygqhvvag
tpgrvfdmirrrslrtraikmlvldeademlnkgfkeqiydvyrylppatqvvlisatlp
hevlemtnkfmtdpirilvkrdeltlegikqffvavereewkfdtlcdlydtltitqavi
fcntkrkvdwltekmretvsqkeresimkefrsgasrvlistvpqvsliinydlpnnrel
yihrigrsgrygrkgvavnfvknddirvlrdieqyystqidempmnv

  • Chain 'T':
    No sequence available.