PDB entry 2j0g

View 2j0g on RCSB PDB site
Description: L-ficolin complexed to N-acetyl-mannosamine
Class: lectin
Keywords: lectin, glycoprotein, innate immunity, fibrinogen-like domain, collagen, immunology, lectin-like, pattern- recognition-protein
Deposited on 2006-08-03, released 2007-01-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ficolin-2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2J0G
      • conflict (97)
      • conflict (176)
    • Uniprot Q15485
    Domains in SCOPe 2.08: d2j0ga_
  • Chain 'B':
    Compound: ficolin-2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2J0G
      • conflict (97)
      • conflict (176)
    • Uniprot Q15485 (1-217)
    Domains in SCOPe 2.08: d2j0gb_
  • Chain 'C':
    Compound: ficolin-2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2J0G
      • conflict (97)
      • conflict (176)
    • Uniprot Q15485 (Start-217)
    Domains in SCOPe 2.08: d2j0gc_
  • Chain 'D':
    Compound: ficolin-2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2J0G
      • conflict (97)
      • conflict (176)
    • Uniprot Q15485 (Start-217)
    Domains in SCOPe 2.08: d2j0gd_
  • Chain 'E':
    Compound: ficolin-2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2J0G (0-0)
      • conflict (97)
      • conflict (176)
    • Uniprot Q15485 (1-217)
    Domains in SCOPe 2.08: d2j0ge_
  • Chain 'F':
    Compound: ficolin-2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2J0G
      • conflict (97)
      • conflict (176)
    • Uniprot Q15485 (Start-217)
    Domains in SCOPe 2.08: d2j0gf_
  • Heterogens: CA, BM3, MAN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2j0gA (A:)
npcltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdf
yrdwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvade
aekynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnl
ngrylrgthgsfanginwksgkgynysykvsemkvrpa

    Sequence, based on observed residues (ATOM records): (download) 
    >2j0gA (A:)
gprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdfyrdwa
tykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvadeaekyn
lvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnlngryl
rgthgsfanginwksgkgynysykvsemkvrp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2j0gB (B:)
npcltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdf
yrdwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvade
aekynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnl
ngrylrgthgsfanginwksgkgynysykvsemkvrpa

    Sequence, based on observed residues (ATOM records): (download) 
    >2j0gB (B:)
pcltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdfy
rdwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvadea
ekynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnln
grylrgthgsfanginwksgkgynysykvsemkvrpa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2j0gC (C:)
npcltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdf
yrdwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvade
aekynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnl
ngrylrgthgsfanginwksgkgynysykvsemkvrpa

    Sequence, based on observed residues (ATOM records): (download) 
    >2j0gC (C:)
cltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdfyr
dwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvadeae
kynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnlng
rylrgthgsfanginwksgkgynysykvsemkvrpa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2j0gD (D:)
npcltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdf
yrdwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvade
aekynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnl
ngrylrgthgsfanginwksgkgynysykvsemkvrpa

    Sequence, based on observed residues (ATOM records): (download) 
    >2j0gD (D:)
tgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdfyrdw
atykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvadeaeky
nlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnlngry
lrgthgsfanginwksgkgynysykvsemkvrpa

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2j0gE (E:)
npcltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdf
yrdwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvade
aekynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnl
ngrylrgthgsfanginwksgkgynysykvsemkvrpa

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2j0gF (F:)
npcltgprtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdf
yrdwatykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvade
aekynlvlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnl
ngrylrgthgsfanginwksgkgynysykvsemkvrpa

    Sequence, based on observed residues (ATOM records): (download) 
    >2j0gF (F:)
prtckdlldrghflsgwhtiylpdcrpltvlcdmdtdgggwtvfqrrvdgsvdfyrdwat
ykqgfgsrlgefwlgndnihaltaqgtselrtdlvdfednyqfakyrsfkvadeaekynl
vlgafvegsagdsltfhnnqsfstkdqdndlntgncavmfqgawwyknchtsnlngrylr
gthgsfanginwksgkgynysykvsemkvrpa