PDB entry 2ib6

View 2ib6 on RCSB PDB site
Description: Structural characterization of a blue chromoprotein and its yellow mutant from the sea anemone cnidopus japonicus
Class: luminescent protein
Keywords: beta barrel, alpha helix, chromoprotein, yellow, chromophore, GFP-like protein, LUMINESCENT PROTEIN
Deposited on 2006-09-10, released 2006-10-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.198
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Yellow mutant chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ8 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib6a_
  • Chain 'B':
    Compound: Yellow mutant chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ8 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib6b_
  • Chain 'C':
    Compound: Yellow mutant chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ8 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib6c_
  • Chain 'D':
    Compound: Yellow mutant chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ8 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib6d_
  • Chain 'E':
    Compound: Yellow mutant chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ8 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib6e_
  • Chain 'F':
    Compound: Yellow mutant chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ8 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib6f_
  • Chain 'G':
    Compound: Yellow mutant chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ8 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib6g_
  • Chain 'H':
    Compound: Yellow mutant chromo protein
    Species: Cnidopus japonicus [TaxId:380086]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0AQQ8 (Start-234)
      • chromophore (67)
    Domains in SCOPe 2.08: d2ib6h_
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2ib6A (A:)
    gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
    ltpncqlgsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
    nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
    yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ib6A (A:)
    isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncql
    gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
    nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
    kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2ib6B (B:)
    gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
    ltpncqlgsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
    nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
    yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ib6B (B:)
    isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncql
    gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
    nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
    kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2ib6C (C:)
    gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
    ltpncqlgsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
    nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
    yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ib6C (C:)
    isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncql
    gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
    nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
    kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2ib6D (D:)
    gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
    ltpncqlgsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
    nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
    yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ib6D (D:)
    isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncql
    gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
    nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
    kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >2ib6E (E:)
    gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
    ltpncqlgsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
    nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
    yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ib6E (E:)
    isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncql
    gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
    nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
    kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >2ib6F (F:)
    gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
    ltpncqlgsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
    nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
    yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ib6F (F:)
    isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncql
    gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
    nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
    kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >2ib6G (G:)
    gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
    ltpncqlgsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
    nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
    yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ib6G (G:)
    isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncql
    gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
    nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
    kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >2ib6H (H:)
    gshmaskisdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdi
    ltpncqlgsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvy
    nikilgcnfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrtt
    yrskkaakalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn
    

    Sequence, based on observed residues (ATOM records): (download)
    >2ib6H (H:)
    isdnvriklymegtvnnhhfmceaegegkpyegtqmenikvtkggplpfsfdiltpncql
    gsvaitkytsgipdyfkqsfpegftwerttiyedgaylttqqetkldgnclvynikilgc
    nfppngpvmqkktqgwepccemrytrdgvlcgqtlmalkcadgnhltchlrttyrskkaa
    kalqmppfhfsdhrpeivkvsengtlfeqhessvarycqtcpsklghn