PDB entry 2i2v

View 2i2v on RCSB PDB site
Description: Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains two 70s ribosomes and is described in remark 400.
Class: ribosome
Keywords: ribosome, protein-nucleic acid complexes
Deposited on 2006-08-16, released 2006-10-24
The last revision prior to the SCOP 1.73 freeze date was dated 2006-12-19, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 3.22 Å
R-factor: 0.287
AEROSPACI score: 0.02 (click here for full SPACI score report)

Chains and heterogens:

• Chain '0':
  Compound: 50S ribosomal protein L32
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7N4 (0-55)
  Domains in SCOP 1.73: d2i2v01
• Chain '1':
  Compound: 50S ribosomal protein L33
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7N9
  Domains in SCOP 1.73: d2i2v11
• Chain '2':
  Compound: 50S ribosomal protein L34
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7P5 (0-45)
  Domains in SCOP 1.73: d2i2v21
• Chain '3':
  Compound: 50S ribosomal protein L35
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7Q1 (0-63)
  Domains in SCOP 1.73: d2i2v31
• Chain '4':
  Compound: 50S ribosomal protein L36
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7Q6 (0-37)
  Domains in SCOP 1.73: d2i2v41
• Chain 'A':
  Compound: 5S ribosomal RNA
  Species: Escherichia coli
  
• Chain 'B':
  Compound: 23S ribosomal RNA
  Species: Escherichia coli
  
• Chain 'C':
  Compound: 50S ribosomal protein L2
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P60422 (0-End)
• Chain 'D':
  Compound: 50S ribosomal protein L3
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P60438 (0-208)
• Chain 'E':
  Compound: 50S ribosomal protein L4
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P60723 (0-200)
• Chain 'F':
  Compound: 50S ribosomal protein L5
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62399 (0-177)
• Chain 'G':
  Compound: 50S ribosomal protein L6
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0AG55 (0-175)
• Chain 'H':
  Compound: 50S ribosomal protein L9
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7R1 (0-148)
• Chain 'I':
  Compound: 50S ribosomal protein L11
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7J7 (0-140)
• Chain 'J':
  Compound: 50S ribosomal protein L13
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0AA10 (0-141)
• Chain 'K':
  Compound: 50S ribosomal protein L14
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ADY3
• Chain 'L':
  Compound: 50S ribosomal protein L15
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P02413 (Start-143)
  Domains in SCOP 1.73: d2i2vl1
• Chain 'M':
  Compound: 50S ribosomal protein L16
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ADY7 (0-135)
  Domains in SCOP 1.73: d2i2vm1
• Chain 'N':
  Compound: 50S ribosomal protein L17
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0AG44 (0-End)
• Chain 'O':
  Compound: 50S ribosomal protein L18
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0C018 (Start-116)
• Chain 'P':
  Compound: 50S ribosomal protein L19
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7K6 (0-113)
  Domains in SCOP 1.73: d2i2vp1
• Chain 'Q':
  Compound: 50S ribosomal protein L20
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7L3 (0-116)
• Chain 'R':
  Compound: 50S ribosomal protein L21
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0AG48 (0-102)
  Domains in SCOP 1.73: d2i2vr1
• Chain 'S':
  Compound: 50S ribosomal protein L22
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P61175 (0-109)
• Chain 'T':
  Compound: 50S ribosomal protein L23
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ADZ0 (0-End)
• Chain 'U':
  Compound: 50S ribosomal protein L24
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P60624 (0-End)
  Domains in SCOP 1.73: d2i2vu1
• Chain 'V':
  Compound: 50S ribosomal protein L25
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P68919 (0-93)
  Domains in SCOP 1.73: d2i2vv1
• Chain 'W':
  Compound: 50S ribosomal protein L27
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7L8 (Start-83)
• Chain 'X':
  Compound: 50S ribosomal protein L28
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7M2 (0-76)
• Chain 'Y':
  Compound: 50S ribosomal protein L29
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7M6 (0-62)
  Domains in SCOP 1.73: d2i2vy1
• Chain 'Z':
  Compound: 50S ribosomal protein L30
  Species: Escherichia coli
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0AG51 (0-57)
• Heterogens: ZN, MG, HOH

PDB Chain Sequences:

• Chain '0':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2i2v0 (0:)
  avqqnkptrskrgmrrshdaltavtslsvdktsgekhlrhhitadgyyrgrkviak
  

  
  
• Chain '1':
  Sequence, based on SEQRES records: (download)
  

  >2i2v1 (1:)
  akgirekiklvssagtghfytttknkrtkpeklelkkfdpvvrqhviykeakik
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >2i2v1 (1:)
  girekiklvssagtghfytttknkrtkpeklelkkfdpvvrqhviykeak
  

  
  
• Chain '2':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2i2v2 (2:)
  mkrtfqpsvlkrnrshgfrarmatkngrqvlarrrakgrarltvsk
  

  
  
• Chain '3':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2i2v3 (3:)
  pkiktvrgaakrfkktgkggfkhkhanlrhiltkkatkrkrhlrpkamvskgdlglviac
  lpya
  

  
  
• Chain '4':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2i2v4 (4:)
  mkvrasvkklcrnckivkrdgvirvicsaepkhkqrqg
  

  
  
• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  No sequence available.
  
  
• Chain 'J':
  No sequence available.
  
  
• Chain 'K':
  No sequence available.
  
  
• Chain 'L':
  Sequence, based on SEQRES records: (download)
  

  >2i2vL (L:)
  mrlntlspaegskkagkrlgrgigsglgktggrghkgqksrsgggvrrgfeggqmplyrr
  lpkfgftsrkaaitaeirlsdlakveggvvdlntlkaaniigiqiefakvilagevttpv
  tvrglrvtkgaraaieaaggkiee
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >2i2vL (L:)
  rlntlspaegskkagkrlgrgigsglgktggrghkgqksrsgggvrrgfeggqmplyrrl
  pkfgftsrkaaitaeirlsdlakveggvvdlntlkaaniigiqiefakvilagevttpvt
  vrglrvtkgaraaieaaggkiee
  

  
  
• Chain 'M':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2i2vM (M:)
  mlqpkrtkfrkmhkgrnrglaqgtdvsfgsfglkavgrgrltarqieaarramtravkrq
  gkiwirvfpdkpitekplavrmgkgkgnveywvaliqpgkvlyemdgvpeelareafkla
  aaklpikttfvtktvm
  

  
  
• Chain 'N':
  No sequence available.
  
  
• Chain 'O':
  No sequence available.
  
  
• Chain 'P':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2i2vP (P:)
  sniikqleqeqmkqdvpsfrpgdtvevkvwvvegskkrlqafegvviairnrglhsaftv
  rkisngegvervfqthspvvdsisvkrrgavrkaklyylrertgkaarikerln
  

  
  
• Chain 'Q':
  No sequence available.
  
  
• Chain 'R':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2i2vR (R:)
  myavfqsggkqhrvsegqtvrlekldiatgetvefaevlmiangeevkigvpfvdggvik
  aevvahgrgekvkivkfrrrkhyrkqqghrqwftdvkitgisa
  

  
  
• Chain 'S':
  No sequence available.
  
  
• Chain 'T':
  No sequence available.
  
  
• Chain 'U':
  Sequence, based on SEQRES records: (download)
  

  >2i2vU (U:)
  aakirrddevivltgkdkgkrgkvknvlssgkviveginlvkkhqkpvpalnqpggivek
  eaaiqvsnvaifnaatgkadrvgfrfedgkkvrffksnsetik
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >2i2vU (U:)
  aakirrddevivltgkdkgkrgkvknvlssgkviveginlvkkhqkpvpalnqpggivek
  eaaiqvsnvaifnaatgkadrvgfrfedgkkvrffksnseti
  

  
  
• Chain 'V':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2i2vV (V:)
  mftinaevrkeqgkgasrrlraankfpaiiyggkeaplaieldhdkvmnmqakaefysev
  ltivvdgkeikvkaqdvqrhpykpklqhidfvra
  

  
  
• Chain 'W':
  No sequence available.
  
  
• Chain 'X':
  No sequence available.
  
  
• Chain 'Y':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2i2vY (Y:)
  mkakelreksveelntellnllreqfnlrmqaasgqlqqshllkqvrrdvarvktllnek
  aga
  

  
  
• Chain 'Z':
  No sequence available.