PDB entry 2hvy
View 2hvy on RCSB PDB site
Description: Crystal structure of an H/ACA box RNP from Pyrococcus furiosus
Class: isomerase/biosynthetic protein/RNA
Keywords: H/ACA RNA, RNP, PSEUDOURIDINE synthase, Guide RNA, ISOMERASE-BIOSYNTHETIC PROTEIN-RNA COMPLEX
Deposited on
2006-07-31, released
2006-09-12
The last revision prior to the SCOPe 2.01 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.24
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Probable tRNA pseudouridine synthase B
Species: Pyrococcus furiosus [TaxId:2261]
Gene: truB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2hvya1, d2hvya2 - Chain 'B':
Compound: Small nucleolar rnp similar to gar1
Species: Pyrococcus furiosus [TaxId:2261]
Gene: GAR1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2hvyb1 - Chain 'C':
Compound: Ribosome biogenesis protein Nop10
Species: Pyrococcus furiosus [TaxId:2261]
Gene: NOP10
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2hvyc1 - Chain 'D':
Compound: 50S ribosomal protein L7Ae
Species: Pyrococcus furiosus [TaxId:2261]
Gene: rpl7ae
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2hvyd1 - Chain 'E':
Compound: h/aca RNA
Species: synthetic, synthetic
- Heterogens: ZN, ATP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2hvyA (A:)
mardevrrilpadikrevlikdenaetnpdwgfppekrpiemhiqfgvinldkppgptsh
evvawikkilnlekaghggtldpkvsgvlpvalekatrvvqallpagkeyvalmhlhgdv
pedkiiqvmkefegeiiqrpplrsavkrrlrtrkvyyievleiegrdvlfrvgveagtyi
rslihhiglalgvgahmselrrtrsgpfkedetlitlhdlvdyyyfwkedgieeyfrkai
qpmekavehlpkvwikdsavaavthgadlavpgiaklhagikrgdlvaimtlkdelvalg
kammtsqemlektkgiavdvekvfmprdwypklwekrdrshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>2hvyA (A:)
rilpadikrevlikdenaetnpdwgfppekrpiemhiqfgvinldkppgptshevvawik
kilnlekaghggtldpkvsgvlpvalekatrvvqallpagkeyvalmhlhgdvpedkiiq
vmkefegeiiqrppllrtrkvyyievleiegrdvlfrvgveagtyirslihhiglalgvg
ahmselrrtrsgpfkedetlitlhdlvdyyyfwkedgieeyfrkaiqpmekavehlpkvw
ikdsavaavthgadlavpgiaklhagikrgdlvaimtlkdelvalgkammtsqemlektk
giavdvekvfmprdwypklw
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2hvyB (B:)
mekqgekmkrlgkvlhyakqgflivrtnwvpslndrvvdkrlqfvgivkdvfgpvkmpyv
aikpkvsnpeiyvgevlyvderkrkespkknkekrmkkkkrlnr
Sequence, based on observed residues (ATOM records): (download)
>2hvyB (B:)
mkrlgkvlhyakqgflivrtnwvpslndrvvdkrlqfvgivkdvfgpvkmpyvaikpkvs
npeiyvgevlyvde
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2hvyC (C:)
mkfrirkcpkcgrytlkevcpvcgektkvahpprfspedpygeyrrrwkrevlgigrkek
Sequence, based on observed residues (ATOM records): (download)
>2hvyC (C:)
frirkcpkcgrytlkevcpvcgektkvahpprfspedpygeyrrrwkrevlgi
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2hvyD (D:)
maakpsyvkfevpkelaekalqaveiardtgkirkgtnettkavergqaklviiaedvdp
eeivahlpplceekeipyiyvpskkelgaaagievaaasvaiiepgkardlveeiamkvk
elmkhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>2hvyD (D:)
kpsyvkfevpkelaekalqaveiardtgkirkgtnettkavergqaklviiaedvdpeei
vahlpplceekeipyiyvpskkelgaaagievaaasvaiiepgkardlveeiamkvkelm
k
- Chain 'E':
No sequence available.