PDB entry 2hmk

View 2hmk on RCSB PDB site
Description: Crystal Structure of Naphthalene 1,2-Dioxygenase Bound to Phenanthrene
Class: oxidoreductase
Keywords: Protein, Rieske Oxygenase, oxidoreductase
Deposited on 2006-07-11, released 2006-10-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-09-02, with a file datestamp of 2020-08-28.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Naphthalene 1,2-dioxygenase alpha subunit
    Species: Pseudomonas sp. [TaxId:306]
    Gene: doxB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hmka1, d2hmka2
  • Chain 'B':
    Compound: Naphthalene 1,2-dioxygenase beta subunit
    Species: Pseudomonas sp. [TaxId:306]
    Gene: doxD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2hmkb_
  • Heterogens: FE, SO4, FES, PEY, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2hmkA (A:)
mnynnkilvsesglsqkhlihgdeelfqhelktifarnwlflthdslipapgdyvtakmg
idevivsrqndgsiraflnvcrhrgktlvsveagnakgfvcsyhgwgfgsngelqsvpfe
kdlygeslnkkclglkevarvesfhgfiygcfdqeapplmdylgdaawylepmfkhsggl
elvgppgkvvikanwkapaenfvgdayhvgwthasslrsgesifsslagnaalppegagl
qmtskygsgmgvlwdgysgvhsadlvpelmafggakqerlnkeigdvrariyrshlnctv
fpnnsmltcsgvfkvwnpidanttevwtyaivekdmpedlkrrladsvqrtfgpagfwes
ddndnmetasqngkkyqsrdsdllsnlgfgedvygdavypgvvgksaigetsyrgfyray
qahvsssnwaefehasstwhteltkttdr

    Sequence, based on observed residues (ATOM records): (download) 
    >2hmkA (A:)
mnynnkilvsesglsqkhlihgdeelfqhelktifarnwlflthdslipapgdyvtakmg
idevivsrqndgsiraflnvcrhrgktlvsveagnakgfvcsyhgwgfgsngelqsvpfe
kdlygeslnkkclglkevarvesfhgfiygcfdqeapplmdylgdaawylepmfkhsggl
elvgppgkvvikanwkapaenfvgdayhvgwthasslrsgesifsslagnaalppegagl
qmtskygsgmgvlwdgysgvhsadlvpelmafggakqerlnkeigdvrariyrshlnctv
fpnnsmltcsgvfkvwnpidanttevwtyaivekdmpedlkrrladsvqrtfgpagfwes
ddndnmetasqngkkyqsrdsdllsnlgfgedvygdavypgvvgksaigetsyrgfyray
qahvsssnwaefehasstwhteltkt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2hmkB (B:)
mminiqedklvsahdaeeilrffnchdsalqqeattlltqeahlldiqayrawlehcvgs
evqyqvisrelraaserryklneamnvynenfqqlkvrvehqldpqnwgnspklrftrfi
tnvqaamdvndkellhirsnvilhrarrgnqvdvfyaaredkwkrgeggvrklvqrfvdy
perilqthnlmvfl

    Sequence, based on observed residues (ATOM records): (download) 
    >2hmkB (B:)
iniqedklvsahdaeeilrffnchdsalqqeattlltqeahlldiqayrawlehcvgsev
qyqvisrelraaserryklneamnvynenfqqlkvrvehqldpqnwgnspklrftrfitn
vqaamdvndkellhirsnvilhrarrgnqvdvfyaaredkwkrgeggvrklvqrfvdype
rilqthnlmvfl