PDB entry 2hhw
View 2hhw on RCSB PDB site
Description: ddTTP:O6-methyl-guanine pair in the polymerase active site, in the closed conformation
Class: Transferase/DNA
Keywords: DNA polymerase I, DNA replication, Klenow fragment, DNA-protein complex, O6-methyl-guanine, Transferase/DNA COMPLEX
Deposited on
2006-06-28, released
2006-12-12
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 1.88 Å
R-factor: 0.196
AEROSPACI score: 0.48
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase I
Species: Geobacillus stearothermophilus [TaxId:1422]
Gene: polA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2hhwa1, d2hhwa2 - Chain 'B':
Compound: 5'-d(*cp*cp*tp*gp*ap*cp*tp*cp*(ddg))-3'
Species: synthetic, synthetic
- Chain 'C':
Compound: 5'-d(*cp*ap*tp*(6og)p*cp*gp*ap*gp*tp*cp*ap*gp*g)-3'
Species: synthetic, synthetic
- Chain 'D':
Compound: DNA polymerase I
Species: Geobacillus stearothermophilus [TaxId:1422]
Gene: polA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2hhwd1, d2hhwd2 - Chain 'E':
Compound: 5'-d(*cp*cp*tp*gp*ap*cp*tp*cp*(ddg))-3'
Species: synthetic, synthetic
- Chain 'F':
Compound: 5'-d(*cp*ap*tp*(6og)p*cp*gp*ap*gp*tp*cp*ap*gp*g)-3'
Species: synthetic, synthetic
- Heterogens: SUC, MN, SO4, 23T, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>2hhwA (A:)
akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpq
fvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakm
kqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllve
leqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgv
ilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvr
patkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysq
ielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnygivygi
sdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpdi
tsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelilea
pkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>2hhwD (D:)
akmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpq
fvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakm
kqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllve
leqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgv
ilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvr
patkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysq
ielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnygivygi
sdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpdi
tsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelilea
pkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.