PDB entry 2h9g
View 2h9g on RCSB PDB site
Description: Crystal structure of phage derived Fab BdF1 with human Death Receptor 5 (DR5)
Class: immune system/apoptosis
Keywords: PHAGE DISPLAY, PROTEIN ENGINEERING, COMBINATORIAL MUTAGENESIS, ANTIBODY LIBRARY, DEATH RECEPTOR-5, agonists, IMMUNE SYSTEM-APOPTOSIS COMPLEX
Deposited on
2006-06-09, released
2006-08-08
The last revision prior to the SCOPe 2.08 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.32 Å
R-factor: 0.234
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Fab BdF1, light chain
Species: HOMO SAPIENS, synthetic [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2h9ga1, d2h9ga2 - Chain 'B':
Compound: Fab BdF1, heavy chain
Species: HOMO SAPIENS, synthetic [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2h9gb1, d2h9gb2 - Chain 'H':
Compound: Fab BdF1, heavy chain
Species: HOMO SAPIENS, synthetic [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2h9gh1, d2h9gh2 - Chain 'L':
Compound: Fab BdF1, light chain
Species: HOMO SAPIENS, synthetic [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2h9gl1, d2h9gl2 - Chain 'R':
Compound: Tumor necrosis factor receptor superfamily member 10B precursor
Species: Homo sapiens [TaxId:9606]
Gene: TNFRSF10B, DR5, KILLER, TRAILR2, TRICK2, ZTNFR9
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2h9gr1, d2h9gr2, d2h9gr3 - Chain 'S':
Compound: Tumor necrosis factor receptor superfamily member 10B precursor
Species: Homo sapiens [TaxId:9606]
Gene: TNFRSF10B, DR5, KILLER, TRAILR2, TRICK2, ZTNFR9
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2h9gs1 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2h9gA (A:)
diqmtqspsslsasvgdrvtitcrasqdvstavawyqqkpgkapklliysasflysgvps
rfsgsgsgtdftltisslqpedfatyycqqsyttpptfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>2h9gA (A:)
diqmtqspsslsasvgdrvtitcrasqdvstavawyqqkpgkapklliysasflysgvps
rfsgsgsgtdftltisslqpedfatyycqqsyttpptfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnr
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2h9gB (B:)
evqlvesggglvqpggslrlscaasgfsigksgihwvrqapgkglewvaviyphdgntay
adsvkgrftisadtskntaylqmnslraedtavyycarrlalvrmwmdywgqgtlvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdkthl
Sequence, based on observed residues (ATOM records): (download)
>2h9gB (B:)
evqlvesggglvqpggslrlscaasgfsigksgihwvrqapgkglewvaviyphdgntay
adsvkgrftisadtskntaylqmnslraedtavyycarrlalvrmwmdywgqgtlvtvss
astkgpsvfplapssgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglysl
ssvvtvpssslgtqtyicnvnhkpsntkvdkkvep
- Chain 'H':
Sequence, based on SEQRES records: (download)
>2h9gH (H:)
evqlvesggglvqpggslrlscaasgfsigksgihwvrqapgkglewvaviyphdgntay
adsvkgrftisadtskntaylqmnslraedtavyycarrlalvrmwmdywgqgtlvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdkthl
Sequence, based on observed residues (ATOM records): (download)
>2h9gH (H:)
evqlvesggglvqpggslrlscaasgfsigksgihwvrqapgkglewvaviyphdgntay
adsvkgrftisadtskntaylqmnslraedtavyycarrlalvrmwmdywgqgtlvtvss
astkgpsvfplapssgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglysl
ssvvtvpssslgtqtyicnvnhkpsntkvdkkvep
- Chain 'L':
Sequence, based on SEQRES records: (download)
>2h9gL (L:)
diqmtqspsslsasvgdrvtitcrasqdvstavawyqqkpgkapklliysasflysgvps
rfsgsgsgtdftltisslqpedfatyycqqsyttpptfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>2h9gL (L:)
diqmtqspsslsasvgdrvtitcrasqdvstavawyqqkpgkapklliysasflysgvps
rfsgsgsgtdftltisslqpedfatyycqqsyttpptfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnr
- Chain 'R':
Sequence, based on SEQRES records: (download)
>2h9gR (R:)
alitqqdlapqqraapqqkrsspseglcppghhisedgrdcisckygqdysthwndllfc
lrctrcdsgevelspctttrntvcqceegtfreedspemcrkcrtgcprgmvkvgdctpw
sdiecvhkes
Sequence, based on observed residues (ATOM records): (download)
>2h9gR (R:)
sspseglcppghhisedgrdcisckygqdysthwndllfclrctrcdsgevelspctttr
ntvcqceegtfreedspemcrkcrtgcprgmvkvgdctpwsdiecvhk
- Chain 'S':
Sequence, based on SEQRES records: (download)
>2h9gS (S:)
alitqqdlapqqraapqqkrsspseglcppghhisedgrdcisckygqdysthwndllfc
lrctrcdsgevelspctttrntvcqceegtfreedspemcrkcrtgcprgmvkvgdctpw
sdiecvhkes
Sequence, based on observed residues (ATOM records): (download)
>2h9gS (S:)
sspseglcppghhisedgrdcisckygqdysthwndllfclrctrcdsgevelspctttr
ntvc