PDB entry 2gyc

View 2gyc on RCSB PDB site
Description: Structure of the 50S subunit of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Class: ribosome
Keywords: SecM; nascent chain, signal transduction, RNA world, polypeptide exit tunnel, translocation, ribosome, elongation arrest, protein-conducting channel
Deposited on 2006-05-09, released 2006-09-26
The last revision prior to the SCOP 1.73 freeze date was dated 2006-09-26, with a file datestamp of 2007-06-04.
Experiment type: EM
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

• Chain '0':
  Compound: 23S ribosomal RNA
  Species: Escherichia coli
  
• Chain '1':
  Compound: 50S ribosomal protein L33
  Species: Escherichia coli
  Domains in SCOP 1.73: d2gyc11
• Chain '2':
  Compound: 50s ribosomal protein l1
  Species: Escherichia coli
  
• Chain '3':
  Compound: 50S ribosomal protein L7/L12
  Species: Escherichia coli
  Domains in SCOP 1.73: d2gyc31, d2gyc32
• Chain '5':
  Compound: 50S ribosomal protein L7/L12
  Species: Escherichia coli
  Domains in SCOP 1.73: d2gyc51, d2gyc52
• Chain '9':
  Compound: 5S ribosomal RNA
  Species: Escherichia coli
  
• Chain 'A':
  Compound: 50S ribosomal protein L2
  Species: Escherichia coli
  
• Chain 'B':
  Compound: 50S ribosomal protein L3
  Species: Escherichia coli
  
• Chain 'C':
  Compound: 50S ribosomal protein L4
  Species: Escherichia coli
  
• Chain 'D':
  Compound: 50S ribosomal protein L5
  Species: Escherichia coli
  
• Chain 'E':
  Compound: 50S ribosomal protein L6
  Species: Escherichia coli
  
• Chain 'F':
  Compound: 50S ribosomal protein L9
  Species: Escherichia coli
  
• Chain 'G':
  Compound: 50S ribosomal protein L11
  Species: Escherichia coli
  
• Chain 'H':
  Compound: 50S ribosomal protein L13
  Species: Escherichia coli
  
• Chain 'I':
  Compound: 50S ribosomal protein L14
  Species: Escherichia coli
  
• Chain 'J':
  Compound: 50S ribosomal protein L15
  Species: Escherichia coli
  Domains in SCOP 1.73: d2gycj1
• Chain 'K':
  Compound: 50S ribosomal protein L16
  Species: Escherichia coli
  Domains in SCOP 1.73: d2gyck1
• Chain 'L':
  Compound: 50S ribosomal protein L17
  Species: Escherichia coli
  
• Chain 'M':
  Compound: 50S ribosomal protein L18
  Species: Escherichia coli
  
• Chain 'N':
  Compound: 50S ribosomal protein L19
  Species: Escherichia coli
  Domains in SCOP 1.73: d2gycn1
• Chain 'O':
  Compound: 50S ribosomal protein L20
  Species: Escherichia coli
  
• Chain 'Q':
  Compound: 50S ribosomal protein L22
  Species: Escherichia coli
  
• Chain 'R':
  Compound: 50S ribosomal protein L23
  Species: Escherichia coli
  
• Chain 'S':
  Compound: 50S ribosomal protein L24
  Species: Escherichia coli
  Domains in SCOP 1.73: d2gycs1
• Chain 'T':
  Compound: 50S ribosomal protein L25
  Species: Escherichia coli
  Domains in SCOP 1.73: d2gyct1
• Chain 'U':
  Compound: 50S ribosomal protein L27
  Species: Escherichia coli
  
• Chain 'W':
  Compound: 50S ribosomal protein L29
  Species: Escherichia coli
  Domains in SCOP 1.73: d2gycw1
• Chain 'X':
  Compound: 50S ribosomal protein L30
  Species: Escherichia coli
  
• Chain 'Z':
  Compound: 50S ribosomal protein L32
  Species: Escherichia coli
  

PDB Chain Sequences:

• Chain '0':
  No sequence available.
  
  
• Chain '1':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2gyc1 (1:)
  akgirekiklvssagtghfytttknkrtkpeklelkkfdpvvrqhviykeak
  

  
  
• Chain '2':
  No sequence available.
  
  
• Chain '3':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2gyc3 (3:)
  itkdqiieavaamsvmdvvelisameekfgvsaaaavavaagpveaaeektefdvilkaa
  gankvavikavrgatglglkeakdlvesapaalkegvskddaealkkaleeagaevevk
  

  
  
• Chain '5':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2gyc5 (5:)
  itkdqiieavaamsvmdvvelisameekfgvsaaaavavaagpveaaeektefdvilkaa
  gankvavikavrgatglglkeakdlvesapaalkegvskddaealkkaleeagaevevk
  

  
  
• Chain '9':
  No sequence available.
  
  
• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  No sequence available.
  
  
• Chain 'J':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2gycJ (J:)
  ntlspaegskkagkrlgrgigsglgktggrghkgqksrsgggvrrgfeggqmplyrrlpk
  fgftsrkaaitaeirlsdlakveggvvdlntlkaaniigiqiefakvilagevttpvtvr
  glrvtkgaraaieaaggkie
  

  
  
• Chain 'K':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2gycK (K:)
  qpkrtkfrkmhkgrnrglaqgtdvsfgsfglkavgrgrltarqieaarramtravkrqgk
  iwirvfpdkpitekplavrmgkgkgnveywvaliqpgkvlyemdgvpeelareafklaaa
  klpikttfvtk
  

  
  
• Chain 'L':
  No sequence available.
  
  
• Chain 'M':
  No sequence available.
  
  
• Chain 'N':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2gycN (N:)
  sniikqleqeqmkqdvpsfrpgdtvevkvwvvegskkrlqafegvviairnrglhsaftv
  rkisngegvervfqthspvvdsisvkrrgavrkaklyylrertgkaarikerln
  

  
  
• Chain 'O':
  No sequence available.
  
  
• Chain 'Q':
  No sequence available.
  
  
• Chain 'R':
  No sequence available.
  
  
• Chain 'S':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2gycS (S:)
  kirrddevivltgkdkgkrgkvknvlssgkviveginlvkkhqkpvpalnqpggivekea
  aiqvsnvaifnaatgkadrvgfrfedgkkvrffksnset
  

  
  
• Chain 'T':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2gycT (T:)
  mftinaevrkeqgkgasrrlraankfpaiiyggkeaplaieldhdkvmnmqakaefysev
  ltivvdgkeikvkaqdvqrhpykpklqhidfvra
  

  
  
• Chain 'U':
  No sequence available.
  
  
• Chain 'W':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >2gycW (W:)
  mkakelreksveelntellnllreqfnlrmqaasgqlqqshllkqvrrdvarvktllnek
  

  
  
• Chain 'X':
  No sequence available.
  
  
• Chain 'Z':
  No sequence available.