PDB entry 2gyb
View 2gyb on RCSB PDB site
Description: Structure of the 30S subunit of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Class: ribosome
Keywords: SecM; nascent chain; signal transduction; RNA world; polypeptide exit tunnel; translocation; ribosome; elongation arrest; protein-conducting channel
Deposited on
2006-05-09, released
2006-09-26
The last revision prior to the SCOP 1.73 freeze date was dated
2006-09-26, with a file datestamp of
2007-06-04.
Experiment type: EM
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.36
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 16S ribosomal RNA
Species: Escherichia coli
- Chain 'B':
Compound: 30S ribosomal subunit protein S2
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: 30S ribosomal subunit protein S3
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: 30S ribosomal subunit protein S4
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: 30S ribosomal subunit protein S5
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: 30S ribosomal subunit protein S6
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: 30S ribosomal subunit protein S7
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: 30S ribosomal subunit protein S8
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d2gybh1 - Chain 'I':
Compound: 30S ribosomal subunit protein S9
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'J':
Compound: 30S ribosomal subunit protein S10
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'K':
Compound: 30S ribosomal subunit protein S11
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: 30S ribosomal subunit protein S12
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'M':
Compound: 30S ribosomal subunit protein S13
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'N':
Compound: 30S ribosomal subunit protein S14
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'O':
Compound: 30S ribosomal subunit protein S15
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'P':
Compound: 30S ribosomal subunit protein S16
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'Q':
Compound: 30S ribosomal subunit protein S17
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'R':
Compound: 30S ribosomal subunit protein S18
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'S':
Compound: 30S ribosomal subunit protein S19
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'T':
Compound: 30S ribosomal subunit protein S20
Species: Escherichia coli
Database cross-references and differences (RAF-indexed):
- Chain 'U':
Compound: tRNA
Species: Escherichia coli
- Chain 'V':
Compound: tRNA
Species: Escherichia coli
- Chain 'W':
Compound: tRNA
Species: Escherichia coli