PDB entry 2gmi

View 2gmi on RCSB PDB site
Description: Mms2/Ubc13~Ubiquitin
Class: ligase, human protein
Keywords: ubiquitin, Ubc13, Mms2, E2, UEV, Ubc13 ubiquitin covalent complex,, LIGASE, HUMAN PROTEIN
Deposited on 2006-04-06, released 2006-09-19
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.237
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin-conjugating enzyme E2 13
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: UBC13
    Database cross-references and differences (RAF-indexed):
    • Uniprot P52490 (0-151)
      • engineered (86)
    Domains in SCOPe 2.06: d2gmia1
  • Chain 'B':
    Compound: Ubiquitin-conjugating enzyme variant MMS2
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: MMS2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2gmib_
  • Chain 'C':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2gmic_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2gmiA (A:)
    maslpkriiketeklvsdpvpgitaephddnlryfqvtiegpeqspyedgifelelylpd
    dypmeapkvrfltkiyhpnidrlgrisldvlktnwspalqirtvllsiqallaspnpndp
    landvaedwikneqgakakarewtklyakkkp
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2gmiB (B:)
    mskvprnfrlleelekgekgfgpescsygladsdditmtkwngtilgpphsnhenriysl
    sidcgpnypdsppkvtfiskinlpcvnpttgevqtdfhtlrdwkraytmetllldlrkem
    atpankklrqpkegetf
    

    Sequence, based on observed residues (ATOM records): (download)
    >2gmiB (B:)
    kvprnfrlleelekgekgfgpescsygladsdditmtkwngtilgpphsnhenriyslsi
    dcgpnypdsppkvtfiskinlpcvnpttgevqtdfhtlrdwkraytmetllldlrkemat
    pankklrqpkegetf
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >2gmiC (C:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg