PDB entry 2gm8

View 2gm8 on RCSB PDB site
Description: TenA Homolog/Thi-4 Thiaminase complexed with product 4-amino-5-hydroxymethyl-2-methylpyrimidine
Class: transferase
Keywords: thiaminase, transcription
Deposited on 2006-04-06, released 2006-04-18
The last revision prior to the SCOP 1.73 freeze date was dated 2006-04-18, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.189
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tenA homolog/Thi-4 Thiaminase
    Species: Pyrobaculum aerophilum str. IM2
    Gene: tena/thi4 (pag5_170)
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZZM9 (10-220)
      • cloning artifact (4-9)
    Domains in SCOP 1.73: d2gm8a1
  • Chain 'B':
    Compound: tenA homolog/Thi-4 Thiaminase
    Species: Pyrobaculum aerophilum str. IM2
    Gene: tena/thi4 (pag5_170)
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZZM9 (10-220)
      • cloning artifact (8-9)
    Domains in SCOP 1.73: d2gm8b1
  • Chain 'C':
    Compound: tenA homolog/Thi-4 Thiaminase
    Species: Pyrobaculum aerophilum str. IM2
    Gene: tena/thi4 (pag5_170)
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZZM9 (10-220)
      • cloning artifact (6-9)
    Domains in SCOP 1.73: d2gm8c1
  • Chain 'D':
    Compound: tenA homolog/Thi-4 Thiaminase
    Species: Pyrobaculum aerophilum str. IM2
    Gene: tena/thi4 (pag5_170)
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8ZZM9 (10-220)
      • cloning artifact (4-9)
    Domains in SCOP 1.73: d2gm8d1
  • Heterogens: HMH, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2gm8A (A:)
malhhhhhhgvtgelrrradgiwqrilahpfvaelyagtlpmekfkyyllqdynylvnfa
kalslaasrapsvdlmktalelaygtvtgemanyeallkevglslrdaaeaepnrvnvsy
maylkstcalegfyqcmaallpcfwsyaeiaerhggklrenpvhvykkwasvylspeyrg
lverlravldssglsaeelwpyfkeaslyelefwqaayegh

    Sequence, based on observed residues (ATOM records): (download) 
    >2gm8A (A:)
hhhhhgvtgelrrradgiwqrilahpfvaelyagtlpmekfkyyllqdynylvnfakals
laasrapsvdlmktalelaygtvtgemanyeallkevglslrdaaeaepnrvnvsymayl
kstcalegfyqcmaallpcfwsyaeiaerhggklrenpvhvykkwasvylspeyrglver
lravldssglsaeelwpyfkeaslyelefwqaayegh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2gm8B (B:)
malhhhhhhgvtgelrrradgiwqrilahpfvaelyagtlpmekfkyyllqdynylvnfa
kalslaasrapsvdlmktalelaygtvtgemanyeallkevglslrdaaeaepnrvnvsy
maylkstcalegfyqcmaallpcfwsyaeiaerhggklrenpvhvykkwasvylspeyrg
lverlravldssglsaeelwpyfkeaslyelefwqaayegh

    Sequence, based on observed residues (ATOM records): (download) 
    >2gm8B (B:)
hgvtgelrrradgiwqrilahpfvaelyagtlpmekfkyyllqdynylvnfakalslaas
rapsvdlmktalelaygtvtgemanyeallkevglslrdaaeaepnrvnvsymaylkstc
alegfyqcmaallpcfwsyaeiaerhggklrenpvhvykkwasvylspeyrglverlrav
ldssglsaeelwpyfkeaslyelefwqaayegh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2gm8C (C:)
malhhhhhhgvtgelrrradgiwqrilahpfvaelyagtlpmekfkyyllqdynylvnfa
kalslaasrapsvdlmktalelaygtvtgemanyeallkevglslrdaaeaepnrvnvsy
maylkstcalegfyqcmaallpcfwsyaeiaerhggklrenpvhvykkwasvylspeyrg
lverlravldssglsaeelwpyfkeaslyelefwqaayegh

    Sequence, based on observed residues (ATOM records): (download) 
    >2gm8C (C:)
hhhgvtgelrrradgiwqrilahpfvaelyagtlpmekfkyyllqdynylvnfakalsla
asrapsvdlmktalelaygtvtgemanyeallkevglslrdaaeaepnrvnvsymaylks
tcalegfyqcmaallpcfwsyaeiaerhggklrenpvhvykkwasvylspeyrglverlr
avldssglsaeelwpyfkeaslyelefwqaayegh

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2gm8D (D:)
malhhhhhhgvtgelrrradgiwqrilahpfvaelyagtlpmekfkyyllqdynylvnfa
kalslaasrapsvdlmktalelaygtvtgemanyeallkevglslrdaaeaepnrvnvsy
maylkstcalegfyqcmaallpcfwsyaeiaerhggklrenpvhvykkwasvylspeyrg
lverlravldssglsaeelwpyfkeaslyelefwqaayegh

    Sequence, based on observed residues (ATOM records): (download) 
    >2gm8D (D:)
hhhhhgvtgelrrradgiwqrilahpfvaelyagtlpmekfkyyllqdynylvnfakals
laasrapsvdlmktalelaygtvtgemanyeallkevglslrdaaeaepnrvnvsymayl
kstcalegfyqcmaallpcfwsyaeiaerhggklrenpvhvykkwasvylspeyrglver
lravldssglsaeelwpyfkeaslyelefwqaayegh