PDB entry 2gki
View 2gki on RCSB PDB site
Description: Heavy and light chain variable single domains of an anti-DNA binding antibody hydrolyze both double- and single-stranded DNAs without sequence specificity
Class: immune system
Keywords: anti-DNA antibody, catalytic antibody, IMMUNE SYSTEM
Deposited on
2006-04-02, released
2006-04-18
The last revision prior to the SCOPe 2.07 freeze date was dated
2017-10-18, with a file datestamp of
2017-10-13.
Experiment type: XRAY
Resolution: 2.88 Å
R-factor: N/A
AEROSPACI score: 0.14
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nuclease
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- GB AAF79128 (22-141)
- see remark 999 (159)
- see remark 999 (230)
- cloning artifact (271-272)
- GB AAF79129 (158-270)
Domains in SCOPe 2.07: d2gkia1, d2gkia2, d2gkia3 - Chain 'B':
Compound: Nuclease
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- GB AAF79128 (22-141)
- linker (156-157)
- see remark 999 (159)
- see remark 999 (230)
- cloning artifact (271-273)
- GB AAF79129 (158-270)
Domains in SCOPe 2.07: d2gkib1, d2gkib2, d2gkib3 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2gkiA (A:)
mkqstialallpllftpvtkarevqlqqsgpelvkpgasvkmsckasgytftsyvmhwvk
qkpgqglewigyinpyndgtkynekfkgkatltsdkssstaymelssltsedsavyycar
gaykrgyamdywgqgtsvtvssrggggsggggsggggsdlvmsqspsslavsagekvtms
ckssqslfnsrtrknylawyqqkpgqspklliywastresgvpdrftgsgsgtdftltis
svqaedlavyyckqsyyhmytfgsgtkleikhhhhhglvprgsgdpkadnk
Sequence, based on observed residues (ATOM records): (download)
>2gkiA (A:)
evqlqqsgpelvkpgasvkmsckasgytftsyvmhwvkqkpgqglewigyinpyndgtky
nekfkgkatltsdkssstaymelssltsedsavyycargaykrgyamdywgqgtsvtvss
dlvmsqspsslavsagekvtmsckssqslfnsrtrknylawyqqkpgqspklliywastr
esgvpdrftgsgsgtdftltissvqaedlavyyckqsyyhmytfgsgtkleikhh
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2gkiB (B:)
mkqstialallpllftpvtkarevqlqqsgpelvkpgasvkmsckasgytftsyvmhwvk
qkpgqglewigyinpyndgtkynekfkgkatltsdkssstaymelssltsedsavyycar
gaykrgyamdywgqgtsvtvssrggggsggggsggggsdlvmsqspsslavsagekvtms
ckssqslfnsrtrknylawyqqkpgqspklliywastresgvpdrftgsgsgtdftltis
svqaedlavyyckqsyyhmytfgsgtkleikhhhhhglvprgsgdpkadnk
Sequence, based on observed residues (ATOM records): (download)
>2gkiB (B:)
evqlqqsgpelvkpgasvkmsckasgytftsyvmhwvkqkpgqglewigyinpyndgtky
nekfkgkatltsdkssstaymelssltsedsavyycargaykrgyamdywgqgtsvtvss
gsdlvmsqspsslavsagekvtmsckssqslfnsrtrknylawyqqkpgqspklliywas
tresgvpdrftgsgsgtdftltissvqaedlavyyckqsyyhmytfgsgtkleikhhh