PDB entry 2fms
View 2fms on RCSB PDB site
Description: DNA Polymerase beta with a gapped DNA substrate and dUMPNPP with magnesium in the catalytic site
Class: transferase/DNA
Keywords: Nucleotidyl Transferase, TRANSFERASE/DNA COMPLEX
Deposited on
2006-01-09, released
2006-04-25
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.196
AEROSPACI score: 0.45
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase beta
Species: Homo sapiens [TaxId:9606]
Gene: POLB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2fmsa1, d2fmsa2, d2fmsa3 - Chain 'D':
Compound: 5'-d(p*gp*tp*cp*gp*g)-3'
- Chain 'P':
Compound: 5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*c)-3'
- Chain 'T':
Compound: 5'-d(*cp*cp*gp*ap*cp*ap*gp*cp*gp*cp*ap*tp*cp*ap*gp*c)-3'
- Heterogens: MG, NA, CL, DUP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2fmsA (A:)
mskrkapqetlnggitdmltelanfeknvsqaihkynayrkaasviakyphkiksgaeak
klpgvgtkiaekideflatgklrklekirqddtsssinfltrvsgigpsaarkfvdegik
tledlrknedklnhhqriglkyfgdfekripreemlqmqdivlnevkkvdseyiatvcgs
frrgaessgdmdvllthpsftsestkqpkllhqvveqlqkvhfitdtlskgetkfmgvcq
lpskndekeyphrridirlipkdqyycgvlyftgsdifnknmrahalekgftineytirp
lgvtgvageplpvdsekdifdyiqwkyrepkdrse
Sequence, based on observed residues (ATOM records): (download)
>2fmsA (A:)
tlnggitdmltelanfeknvsqaihkynayrkaasviakyphkiksgaeakklpgvgtki
aekideflatgklrklekirqddtsssinfltrvsgigpsaarkfvdegiktledlrkne
dklnhhqriglkyfgdfekripreemlqmqdivlnevkkvdseyiatvcgsfrrgaessg
dmdvllthpsftsestkqpkllhqvveqlqkvhfitdtlskgetkfmgvcqlpskndeke
yphrridirlipkdqyycgvlyftgsdifnknmrahalekgftineytirplgvtgvage
plpvdsekdifdyiqwkyrepkdrse
- Chain 'D':
No sequence available.
- Chain 'P':
No sequence available.
- Chain 'T':
No sequence available.