PDB entry 2fj7
View 2fj7 on RCSB PDB site
Description: Crystal structure of Nucleosome Core Particle Containing a Poly (dA.dT) Sequence Element
Class: structural protein/DNA
Keywords: Protein-DNA complex, narrow minor groove,, STRUCTURAL PROTEIN/DNA COMPLEX
Deposited on
2005-12-31, released
2006-09-26
The last revision prior to the SCOPe 2.01 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.28
AEROSPACI score: 0.09
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: histone h3
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2fj7a1 - Chain 'B':
Compound: histone h4
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2fj7b1 - Chain 'C':
Compound: histone h2a
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: histone h2b
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2fj7d1 - Chain 'E':
Compound: histone h3
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2fj7e1 - Chain 'F':
Compound: histone h4
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2fj7f1 - Chain 'G':
Compound: histone h2a
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: histone h2b
Species: Xenopus laevis [TaxId:8355]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d2fj7h1 - Chain 'I':
Compound: 147 bp DNA containing 16 bp poly dA element
- Chain 'J':
Compound: 147 bp DNA containing 16 bp poly dT element
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2fj7A (A:)
artkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkstel
lirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtim
pkdiqlarrirgera
Sequence, based on observed residues (ATOM records): (download)
>2fj7A (A:)
phryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqease
aylvalfedtnlcaihakrvtimpkdiqlarrirgera
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2fj7B (B:)
sgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkv
flenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
Sequence, based on observed residues (ATOM records): (download)
>2fj7B (B:)
dniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrktvta
mdvvyalkrqgrtlygfgg
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2fj7D (D:)
pepaksapapkkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskams
imnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtk
ytsak
Sequence, based on observed residues (ATOM records): (download)
>2fj7D (D:)
rkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsr
eiqtavrlllpgelakhavsegtkavtkytsak
- Chain 'E':
Sequence, based on SEQRES records: (download)
>2fj7E (E:)
artkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkstel
lirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtim
pkdiqlarrirgera
Sequence, based on observed residues (ATOM records): (download)
>2fj7E (E:)
phryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqease
aylvalfedtnlcaihakrvtimpkdiqlarrirgera
- Chain 'F':
Sequence, based on SEQRES records: (download)
>2fj7F (F:)
sgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkv
flenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
Sequence, based on observed residues (ATOM records): (download)
>2fj7F (F:)
rkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakr
ktvtamdvvyalkrqgrtlygfgg
- Chain 'G':
No sequence available.
- Chain 'H':
Sequence, based on SEQRES records: (download)
>2fj7H (H:)
pepaksapapkkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskams
imnsfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtk
ytsak
Sequence, based on observed residues (ATOM records): (download)
>2fj7H (H:)
rkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstitsr
eiqtavrlllpgelakhavsegtkavtkytsak
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.