PDB entry 2fik
View 2fik on RCSB PDB site
Description: Structure of a microbial glycosphingolipid bound to mouse CD1d
Class: immune system
Keywords: NKT cells, CD1d, MHC-fold, immune system, bacterial antigen, TCR
Deposited on
2005-12-29, released
2006-03-21
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.209
AEROSPACI score: 0.47
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: T-cell surface glycoprotein CD1d1
Species: Mus musculus [TaxId:10090]
Gene: Cd1d1, Cd1.1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2fika1, d2fika2 - Chain 'B':
Compound: B(2)-microglobulin
Species: Mus musculus [TaxId:10090]
Gene: BETA-2-MICROGLOBULIN
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2fikb_ - Heterogens: NAG, GSL, PLM, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2fikA (A:)
seaqqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsn
qqweklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvaf
qgkyvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagk
sdlekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpn
adetwylqatldveageeaglacrvkhsslggqdiilywgshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>2fikA (A:)
ytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqweklq
hmfqvyrvsftrdiqelvkypieiqlsagcemypgnasesflhvafqgkyvvrfwgtswq
tvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekqekpvawls
svpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwylqatldve
ageeaglacrvkhsslggqdiilyw
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2fikB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>2fikB (B:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhasmaepktvywdrd