PDB entry 2fd6
View 2fd6 on RCSB PDB site
Description: Structure of Human Urokinase Plasminogen Activator in Complex with Urokinase Receptor and an anti-upar antibody at 1.9 A
Class: immune system, hydrolase
Keywords: uPAR, ATF, ATN-615 antibody, Fab, crystal structure, ternary complex
Deposited on
2005-12-13, released
2006-02-21
The last revision prior to the SCOP 1.75 freeze date was dated
2006-02-21, with a file datestamp of
2007-06-28.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.239
AEROSPACI score: 0.49
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: urokinase-type plasminogen activator
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d2fd6a1, d2fd6a2 - Chain 'H':
Compound: H chain of Fab of ATN-615 anti-uPAR antibody
Species: MUS MUSCULUS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d2fd6h1, d2fd6h2 - Chain 'L':
Compound: L chain of Fab of ATN-615 anti-uPAR antibody
Species: MUS MUSCULUS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d2fd6l1, d2fd6l2 - Chain 'U':
Compound: Urokinase plasminogen activator surface receptor
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d2fd6u1, d2fd6u2, d2fd6u3 - Heterogens: NAG, SO4, ETX, PG4, EDO, PGE, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>2fd6A (A:)
cdclnggtcvsnkyfsnihwcncpkkfggqhceidksktcyegnghfyrgkastdtmgrp
clpwnsatvlqqtyhahrsdalqlglgkhnycrnpdnrrrpwcyvqvglkplvqecmvhd
ca
- Chain 'H':
Sequence, based on SEQRES records: (download)
>2fd6H (H:)
gvklqqsgpevvkpgasvkisckasgysftnfyihwvkqrpgqglewigwifhgsdntey
nekfkdkatltadtssstaymqlssltsedsavyfcarwgphwyfdvwgqgttvtvssak
ttppsvyplapgnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsss
vtvpsstwpsetvtcnvahpasstkvdkkiaaa
Sequence, based on observed residues (ATOM records): (download)
>2fd6H (H:)
gvklqqsgpevvkpgasvkisckasgysftnfyihwvkqrpgqglewigwifhgsdntey
nekfkdkatltadtssstaymqlssltsedsavyfcarwgphwyfdvwgqgttvtvssak
ttppsvyplapnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssv
tvpsstwpsetvtcnvahpasstkvdkkiaaa
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>2fd6L (L:)
divltqspditaaslgqkvtitcsasssvsymhwyqqksgtspkpwifeisklasgvpar
fsgsgsgtsysltissmeaedaaiyycqqwnypftfgggtkleikradaaptvsifppss
eqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltlt
kdeyerhnsytceathktstspivksfnrneaka
- Chain 'U':
Sequence, based on SEQRES records: (download)
>2fd6U (U:)
slrcmqcktngdcrveecalgqdlcrttivrlweegeelelvekscthsektnrtlsyrt
glkitsltevvcgldlcnqgnsgravtysrsryleciscgssdmscergrhqslqcrspe
eqcldvvthwiqegeegrpkddrhlrgcgylpgcpgsngfhnndtfhflkccnttkcneg
pilelenlpqngrqcysckgnsthgcsseetflidcrgpmnqclvatgthepknqsymvr
gcatasmcqhahlgdafsmnhidvscctksgcnhpd
Sequence, based on observed residues (ATOM records): (download)
>2fd6U (U:)
slrcmqcktngdcrveecalgqdlcrttivrlweelelvekscthsektnrtlsyrtglk
itsltevvcgldlcnqgnyleciscgssdmscergrhqslqcrspeeqcldvvthwddrh
lrgcgylpgcpgsngfhnndtfhflkccnttkcnegpilelenlpqngrqcysckgnsth
gcsseetflidcrgpmnqclvatgthepknqsymvrgcatasmcqlgdafsmnhidvscc
tksgcnhpd