PDB entry 2ekp

View 2ekp on RCSB PDB site
Description: Structure of TT0495 protein from Thermus thermophilus
Class: oxidoreductase
Keywords: gluconate dehydrogenase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, OXIDOREDUCTASE
Deposited on 2007-03-23, released 2008-04-01
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.15 Å
R-factor: 0.168
AEROSPACI score: 0.85 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2-deoxy-D-gluconate 3-dehydrogenase
    Species: Thermus thermophilus [TaxId:300852]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d2ekpa_
  • Heterogens: NAD, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ekpA (A:)
merkalvtggsrgigraiaealvargyrvaiasrnpeeaaqslgavplptdlekddpkgl
vkralealgglhvlvhaaavnvrkpalelsyeewrrvlylhldvafllaqaaaphmaeag
wgrvlfigsvttftaggpvpipayttaktallgltralakewarlgirvnllcpgyvete
ftlplrqnpelyepitaripmgrwarpeeiarvaavlcgdeaeyltgqavavdggflay

    Sequence, based on observed residues (ATOM records): (download) 
    >2ekpA (A:)
erkalvtggsrgigraiaealvargyrvaiasrnpeeaaqslgavplptdlekddpkglv
kralealgglhvlvhaaavnvrkpalelsyeewrrvlylhldvafllaqaaaphmaeagw
grvlfigsvttftaggpvpipayttaktallgltralakewarlgirvnllcpgyvetef
tlplrqnpelyepitaripmgrwarpeeiarvaavlcgdeaeyltgqavavdggflay