PDB entry 2efe
View 2efe on RCSB PDB site
Description: Ara7-GDPNH2/AtVps9a
Class: transport protein
Keywords: GEF, GTPase, Vps9, Rab5, nucleotide, TRANSPORT PROTEIN
Deposited on
2007-02-22, released
2008-02-26
The last revision prior to the SCOPe 2.04 freeze date was dated
2011-12-21, with a file datestamp of
2011-12-16.
Experiment type: XRAY
Resolution: 2.08 Å
R-factor: 0.23
AEROSPACI score: 0.25
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Similarity to vacuolar protein sorting-associated protein VPS9
Species: Arabidopsis thaliana [TaxId:3702]
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Small GTP-binding protein-like
Species: Arabidopsis thaliana [TaxId:3702]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2efeb_ - Chain 'C':
Compound: Similarity to vacuolar protein sorting-associated protein VPS9
Species: Arabidopsis thaliana [TaxId:3702]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Small GTP-binding protein-like
Species: Arabidopsis thaliana [TaxId:3702]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d2efed_ - Heterogens: GNH, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2efeB (B:)
gsmaaagnksinaklvllgdvgagksslvlrfvkdqfvefqestigaaffsqtlavndat
vkfeiwdtagqeryhslapmyyrgaaaaiivfdvtnqasferakkwvqelqaqgnpnmvm
alagnksdlldarkvtaedaqtyaqenglffmetsaktatnvkeifyeiarrlprvqpte
n
Sequence, based on observed residues (ATOM records): (download)
>2efeB (B:)
sinaklvllgdvgagksslvlrfvkdqfvefqestigaaffsqtlavndatvkfeiwdta
gqeryhslapmyyrgaaaaiivfdvtnqasferakkwvqelqaqgnpnmvmalagnksdl
ldarkvtaedaqtyaqenglffmetsaktatnvkeifyeiarrlp
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2efeD (D:)
gsmaaagnksinaklvllgdvgagksslvlrfvkdqfvefqestigaaffsqtlavndat
vkfeiwdtagqeryhslapmyyrgaaaaiivfdvtnqasferakkwvqelqaqgnpnmvm
alagnksdlldarkvtaedaqtyaqenglffmetsaktatnvkeifyeiarrlprvqpte
n
Sequence, based on observed residues (ATOM records): (download)
>2efeD (D:)
sinaklvllgdvgagksslvlrfvkdqfvefqestigaaffsqtlavndatvkfeiwdta
gqeryhslapmyyrgaaaaiivfdvtnqasferakkwvqelqaqgnpnmvmalagnksdl
ldarkvtaedaqtyaqenglffmetsaktatnvkeifyeiarrlp