SCOPe 2.06: Structural Classification of Proteins

PDB entry 2dw7

View 2dw7 on RCSB PDB site
Description: Crystal structure of D-tartrate dehydratase from Bradyrhizobium japonicum complexed with Mg++ and meso-tartrate
Class: lyase
Keywords: D-tartrate dehydratase, Enolase superfamily, meso-tartrate, LYASE
Deposited on 2006-08-07, released 2006-12-19
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.241
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7a1, d2dw7a2
Chain 'B':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7b1, d2dw7b2
Chain 'C':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7c1, d2dw7c2
Chain 'D':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7d1, d2dw7d2
Chain 'E':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7e1, d2dw7e2
Chain 'F':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7f1, d2dw7f2
Chain 'G':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7g1, d2dw7g2
Chain 'H':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7h1, d2dw7h2
Chain 'I':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7i1, d2dw7i2
Chain 'J':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7j1, d2dw7j2
Chain 'K':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7k1, d2dw7k2
Chain 'L':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7l1, d2dw7l2
Chain 'M':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7m1, d2dw7m2
Chain 'N':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7n1, d2dw7n2
Chain 'O':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7o1, d2dw7o2
Chain 'P':
Compound: Bll6730 protein
Species: BRADYRHIZOBIUM JAPONICUM [TaxId:375]
Database cross-references and differences (RAF-indexed):
- Uniprot Q89FH0 (Start-388)
Domains in SCOPe 2.06: d2dw7p1, d2dw7p2
Heterogens: MG, SRT, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>2dw7A (A:)
msvrivdvreitkpisspirnayidftkmttslvavvtdvvregkrvvgygfnsngrygq
gglirerfasrileadpkkllneagdnldpdkvwaamminekpgghgersvavgtidmav
wdavakiagkplfrllaerhgvkanprvfvyaaggyyypgkglsmlrgemrgyldrgynv
vkmkiggapieedrmrieavleeigkdaqlavdangrfnletgiayakmlrdyplfwyee
vgdpldyalqaalaefypgpmatgenlfshqdarnllryggmrpdrdwlqfdcalsyglc
eyqrtlevlkthgwspsrciphgghqmslniaaglglggnesypdlfqpyggfpdgvrve
nghitmpdlpgigfegksdlykemkalae