PDB entry 2drw

View 2drw on RCSB PDB site
Description: The crystal structutre of D-amino acid amidase from Ochrobactrum anthropi SV3
Class: hydrolase
Keywords: penicillin recognizing protein, D-stereospecific, amidase, hydrophobic, hydrolase
Deposited on 2006-06-15, released 2006-07-04
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.185
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2drwa1
  • Chain 'B':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2drwb_
  • Chain 'C':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2drwc_
  • Chain 'D':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2drwd_
  • Chain 'E':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2drwe_
  • Chain 'F':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi [TaxId:529]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2drwf_
  • Heterogens: BA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2drwA (A:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2drwA (A:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasc
tksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmis
dkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifapl
gmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgana
agdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygs
selkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikns
rs

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2drwB (B:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2drwB (B:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasc
tksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmis
dkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifapl
gmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgana
agdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygs
selkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikns
rs

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2drwC (C:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2drwC (C:)
dlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasct
ksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmisd
kswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifaplg
mkdtwvgthetfpiereargymhadenpqwdvsgagdpvdgvwdstewfplsganaagdm
vstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygsselk
ghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaiknsrs

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2drwD (D:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2drwD (D:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasc
tksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmis
dkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifapl
gmkdtwvgthetfpiereargymhaaagdpvdgvwdstewfplsganaagdmvstprdiv
kflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygsselkghlgqipg
htsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaiknsrs

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2drwE (E:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2drwE (E:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadknkmpmtgdhlfriasct
ksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmisd
kswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifaplg
mkdtwvgthetfpiereargymhapvdgvwdstewfplsganaagdmvstprdivkflna
lfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygsselkghlgqipghtsim
grdeetgaalmliqnsgagdfesfylkgvnepvdrvleaiknsrs

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2drwF (F:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2drwF (F:)
aiqgilddhvargvvgvslalclpgeetslyqsgyadkmpmtgdhlfriasctksfiatg
lhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmisdkswtaqe
ivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifaplgmkdtwvg
thetfpiereargymhwdstewfplsganaagdmvstprdivkflnalfdgrildqkrlw
emkdnikpaffpgsntvanghglllmrygsselkghlgqipghtsimgrdeetgaalmli
qnsgagdfesfylkgvnepvdrvleai