PDB entry 2dex

View 2dex on RCSB PDB site
Description: Crystal structure of human peptidylarginine deiminase 4 in complex with histone H3 N-terminal peptide including Arg17
Class: hydrolase
Keywords: histone modification enzyme
Deposited on 2006-02-18, released 2006-04-11
The last revision prior to the SCOP 1.73 freeze date was dated 2006-04-11, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.207
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 10-mer peptide from histone H3
    Species: synthetic, synthetic
  • Chain 'X':
    Compound: Protein-arginine deiminase type IV
    Species: HOMO SAPIENS
    Gene: PADI4, PADI5, PDI5
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UM07 (Start-670)
      • engineered (652)
    Domains in SCOP 1.73: d2dexx1, d2dexx2, d2dexx3
  • Heterogens: CA, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >2dexX (X:)
gplgspefmaqgtlirvtpeqpthavcvlgtltqldicssapedctsfsinaspgvvvdi
ahsppakkkstgsstwpldpgvevtltmkaasgstgdqkvqisyygpktppvkallylta
veislcaditrtgkvkptravkdqrtwtwgpcgqgaillvncdrdnlessamdceddevl
dsedlqdmslmtlstktpkdfftnhtlvlhvarsemdkvrvfqatrgklsskcsvvlgpk
wpshylmvpggkhnmdfyvealafpdtdfpglitltislldtsnlelpeavvfqdsvvfr
vapwimtpntqppqevyacsifenedflksvttlamkakcklticpeeenmddqwmqdem
eigyiqaphktlpvvfdsprnrglkefpikrvmgpdfgyvtrgpqtggisgldsfgnlev
sppvtvrgkeyplgrilfgdscypsndsrqmhqalqdflsaqqvqapvklysdwlsvghv
deflsfvpapdrkgfrlllasprscyklfqeqqneghgeallfegikkkkqqkiknilsn
ktlrehnsfvercidwnrellkrelglaesdiidipqlfklkefskaeaffpnmvnmlvl
gkhlgipkpfgpvingrccleekvcslleplglqctfindfftyhirhgevhagtnvrrk
pfsfkwwnmvp

    Sequence, based on observed residues (ATOM records): (download) 
    >2dexX (X:)
gtlirvtpeqpthavcvlgtltqldicssaptsfsinaspgvvvditwpldpgvevtltm
kaasgstgdqkvqisyygpktppvkallyltaveislcaditrtgkqrtwtwgpcgqgai
llvncdrdnlessamdceddevldsedlqdmslmtlstktpkdfftnhtlvlhvarsemd
kvrvfqatcsvvlgpkwpshylmvpggkhnmdfyvealafpdtdfpglitltislldtsn
lelpeavvfqdsvvfrvapwimtpntqppqevyacsifenedflksvttlamkakcklti
cpeeenmddqwmqdemeigyiqaphktlpvvfdsprnrglkefpikrvmgpdfgyvtrgp
qtggisgldsfgnlevsppvtvrgkeyplgrilfgdscypsndsrqmhqalqdflsaqqv
qapvklysdwlsvghvdeflsfvpapdrkgfrlllasprscyklfqeqqneghgeallfe
gikkkkqqkiknilsnktlrehnsfvercidwnrellkrelglaesdiidipqlfklkef
skaeaffpnmvnmlvlgkhlgipkpfgpvingrccleekvcslleplglqctfindffty
hirhgevhagtnvrrkpfsfkwwnmvp