PDB entry 2ddq
View 2ddq on RCSB PDB site
Description: Crystal Structure of the Fab fragment of a R310 antibody complexed with (R)-HNE-histidine adduct
Class: immune system
Keywords: monoclonal antibody, 4-hydroxy-2-nonenal, immunoglobulin, IMMUNE SYSTEM
Deposited on
2006-02-02, released
2006-07-11
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.225
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: R310 antibody heavy chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2ddqh1 - Chain 'L':
Compound: R310 antibody light chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2ddql1, d2ddql2 - Heterogens: EPE, HRB, HOH
PDB Chain Sequences:
- Chain 'H':
Sequence, based on SEQRES records: (download)
>2ddqH (H:)
kvklqesgpelvkpgasvkmsckasgytftsyvmhwvkqkpgqglewigyinpyndgtky
nekfkgkatltsdkssstaymelssltsedsavyycapyggywgqgttvtvssakttaps
vyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlsss
vtvtsstwpsqsitcnvahpasstkvdkkiepr
Sequence, based on observed residues (ATOM records): (download)
>2ddqH (H:)
kvklqesgpelvkpgasvkmsckasgytftsyvmhwvkqkpgqglewigyinpyndgtky
nekfkgkatltsdkssstaymelssltsedsavyycapyggywgqgttvtvssakttaps
vyplapvcgtgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlsssvt
vtsstwpsqsitcnvahpasstkvdkkiepr
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>2ddqL (L:)
dvlmtqtplslpvslgdqasiscrssqsivhsngntylewylqkpgqspklliykvsnrf
sgvpdrfsgsgsgtdftlkisrveaedlgvyycfqgshvpltfgagtklelkradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrne