PDB entry 2dd8
View 2dd8 on RCSB PDB site
Description: Crystal Structure of SARS-CoV Spike Receptor-Binding Domain Complexed with Neutralizing Antibody
Class: immune system/viral protein
Keywords: SARS, S protein, antibody, epitopes, vaccines, inhibitors, IMMUNE SYSTEM-VIRAL PROTEIN COMPLEX
Deposited on
2006-01-24, released
2006-04-04
The last revision prior to the SCOPe 2.07 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.199
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: IGG Heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: recombinant antibody Fab
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2dd8h1, d2dd8h2, d2dd8h3 - Chain 'L':
Compound: IGG Light chain
Species: Homo sapiens [TaxId:9606]
Gene: recombinant antibody Fab
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2dd8l1, d2dd8l2 - Chain 'S':
Compound: Spike glycoprotein
Species: SARS coronavirus [TaxId:227859]
Gene: Tor2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2dd8s1 - Heterogens: NAG, PO4, HOH
PDB Chain Sequences:
- Chain 'H':
Sequence, based on SEQRES records: (download)
>2dd8H (H:)
qvqlqqsgaevkkpgssvkvsckasggtfssytiswvrqapgqglewmggitpilgiany
aqkfqgrvtittdeststaymelsslrsedtavyycardtvmggmdvwgqgttvtvssas
tkgpsvfplapsskstsggtsalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
yslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdktsplfvhhhhhhgdykd
dddkg
Sequence, based on observed residues (ATOM records): (download)
>2dd8H (H:)
vqlqqsgaevkkpgssvkvsckasggtfssytiswvrqapgqglewmggitpilgianya
qkfqgrvtittdeststaymelsslrsedtavyycardtvmggmdvwgqgttvtvssast
kgpsvfplapsskstsggtsalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
slssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc
- Chain 'L':
Sequence, based on SEQRES records: (download)
>2dd8L (L:)
syeltqppsvsvapgktaritcggnnigsksvhwyqqkpgqapvlvvyddsdrpsgiper
fsgsnsgntatltisrveagdeadyycqvwdsssdyvfgtgtkvtvlgqpkanptvtlfp
psseefqankatlvclisdfypgavtvawkadgspvkagvettkpskqsnnkyaassyls
ltpeqwkshrsyscqvthegstvektvaptecs
Sequence, based on observed residues (ATOM records): (download)
>2dd8L (L:)
syeltqppsvsvapgktaritcggnnigsksvhwyqqkpgqapvlvvyddsdrpsgiper
fsgsnsgntatltisrveagdeadyycqvwdsssdyvfgtgtkvtvlgqpkanptvtlfp
psseefqankatlvclisdfypgavtvawkadgspvkagvettkpskqsnnkyaassyls
ltpeqwkshrsyscqvthegstvektvaptec
- Chain 'S':
Sequence, based on SEQRES records: (download)
>2dd8S (S:)
pnitnlcpfgevfnatkfpsvyawerkkisncvadysvlynstffstfkcygvsatklnd
lcfsnvyadsfvvkgddvrqiapgqtgviadynyklpddfmgcvlawntrnidatstgny
nykyrylrhgklrpferdisnvpfspdgkpctppalncywplndygfytttgigyqpyrv
vvlsfellnapatvcgpklstd
Sequence, based on observed residues (ATOM records): (download)
>2dd8S (S:)
nlcpfgevfnatkfpsvyawerkkisncvadysvlynstffstfkcygvsatklndlcfs
nvyadsfvvkgddvrqiapgqtgviadynyklpddfmgcvlawntrnidatstgnynyky
rylrhgklrpferdisnvpfspdgkpctppalncywplndygfytttgigyqpyrvvvls
fellnapatvcg