PDB entry 2d83

View 2d83 on RCSB PDB site
Description: The Crystal Structure of D-amino acid amidase from Ochrobactrum anthropi SV3
Class: hydrolase
Keywords: D-stereospecific, Amidase
Deposited on 2005-12-01, released 2005-12-20
The last revision prior to the SCOPe 2.06 freeze date was dated 2006-07-04, with a file datestamp of 2007-06-01.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.186
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2d83a_
  • Chain 'B':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2d83b_
  • Chain 'C':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2d83c_
  • Chain 'D':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2d83d_
  • Chain 'E':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2d83e_
  • Chain 'F':
    Compound: D-amino acid amidase
    Species: Ochrobactrum anthropi
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2d83f_
  • Heterogens: BA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2d83A (A:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2d83A (A:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasc
tksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmis
dkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifapl
gmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgana
agdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygs
selkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikns
rs

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2d83B (B:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2d83B (B:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasc
tksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmis
dkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifapl
gmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgana
agdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygs
selkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikns
rs

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2d83C (C:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2d83C (C:)
dlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasct
ksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmisd
kswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifaplg
mkdtwvgthetfpiereargymhadenpqwdvsgagdpvdgvwdstewfplsganaagdm
vstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygsselk
ghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaiknsrs

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2d83D (D:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2d83D (D:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfriasc
tksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmis
dkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifapl
gmkdtwvgthetfpiereargymhaaagdpvdgvwdstewfplsganaagdmvstprdiv
kflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygsselkghlgqipg
htsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaiknsrs

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2d83E (E:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2d83E (E:)
sdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadknkmpmtgdhlfriasct
ksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmisd
kswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifaplg
mkdtwvgthetfpiereargymhapvdgvwdstewfplsganaagdmvstprdivkflna
lfdgrildqkrlwemkdnikpaffpgsntvanghglllmrygsselkghlgqipghtsim
grdeetgaalmliqnsgagdfesfylkgvnepvdrvleaiknsrs

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2d83F (F:)
msdlnnaiqgilddhvargvvgvslalclpgeetslyqsgyadkfnkmpmtgdhlfrias
ctksfiatglhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmi
sdkswtaqeivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifap
lgmkdtwvgthetfpiereargymhaaaddenpqwdvsgagdpvdgvwdstewfplsgan
aagdmvstprdivkflnalfdgrildqkrlwemkdnikpaffpgsntvanghglllmryg
sselkghlgqipghtsimgrdeetgaalmliqnsgagdfesfylkgvnepvdrvleaikn
srs

    Sequence, based on observed residues (ATOM records): (download) 
    >2d83F (F:)
aiqgilddhvargvvgvslalclpgeetslyqsgyadkmpmtgdhlfriasctksfiatg
lhllvqdgtvdldepitrwfpdlpkaaqmpvrillnhrsglpdfetsmpmisdkswtaqe
ivdfsfrhgvqkepwhgmeysntgyvlagmiiahetgkpysdhlrsrifaplgmkdtwvg
thetfpiereargymhwdstewfplsganaagdmvstprdivkflnalfdgrildqkrlw
emkdnikpaffpgsntvanghglllmrygsselkghlgqipghtsimgrdeetgaalmli
qnsgagdfesfylkgvnepvdrvleai