PDB entry 2d3o
View 2d3o on RCSB PDB site
Description: Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans
Class: Ribosome
Keywords: Ribosome, Trigger Factor, Nascent Chain, 50S, Protein Folding, SRP
Deposited on
2005-09-30, released
2005-12-06
The last revision prior to the SCOP 1.75 freeze date was dated
2005-12-06, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 3.35 Å
R-factor: 0.299
AEROSPACI score: 0.03
(click here for full SPACI score report)
Chains and heterogens:
- Chain '0':
Compound: 23S ribosomal RNA
Species: Deinococcus radiodurans
- Chain '1':
Compound: Trigger Factor
Species: Deinococcus radiodurans
Database cross-references and differences (RAF-indexed):
- Chain 'R':
Compound: 50S ribosomal protein L23
Species: Deinococcus radiodurans
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d2d3or1 - Chain 'S':
Compound: 50S ribosomal protein L24
Species: Deinococcus radiodurans
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d2d3os1 - Chain 'W':
Compound: 50S ribosomal protein L29
Species: Deinococcus radiodurans
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d2d3ow1
PDB Chain Sequences:
- Chain '0':
No sequence available.
- Chain '1':
No sequence available.
- Chain 'R':
Sequence, based on SEQRES records: (download)
>2d3oR (R:)
mshydilqapvisekaysamergvysfwvspkatkteikdaiqqafgvrvigistmnvpg
krkrvgrfigqrndrkkaivrlaegqsiealagqa
Sequence, based on observed residues (ATOM records): (download)
>2d3oR (R:)
shydilqapvisekaysamergvysfwvspkatkteikdaiqqafgvrvigistmnvpgk
rkrvgrfigqrndrkkaivrlaegqsiealagq
- Chain 'S':
Sequence, based on SEQRES records: (download)
>2d3oS (S:)
mprpsagshhndklhfkkgdtvivlsgkhkgqtgkvllalprdqkvvvegvnvitknvkp
smtnpqggqeqrelalhaskvalvdpetgkatrvrkqivdgkkvrvavasgktid
Sequence, based on observed residues (ATOM records): (download)
>2d3oS (S:)
psagshhndklhfkkgdtvivlsgkhkgqtgkvllalprdqkvvvegvnvitknvkpsmt
npqggqeqrelalhaskvalvdpetgkatrvrkqivdgkkvrvavasgkt
- Chain 'W':
Sequence, based on SEQRES records: (download)
>2d3oW (W:)
mkpsemrnlqatdfakeidarkkelmelrfqaaagqlaqphrvrqlrrevaqlntvkael
arkgeqq
Sequence, based on observed residues (ATOM records): (download)
>2d3oW (W:)
mkpsemrnlqatdfakeidarkkelmelrfqaaagqlaqphrvrqlrrevaqlntvkael
arkgeq