PDB entry 2cii

View 2cii on RCSB PDB site
Description: the crystal structure of h-2db complexed with a partial peptide epitope suggests an MHC class I assembly-intermediate
Class: immune system/peptide
Keywords: immune system/peptide, complex (antigen/peptide), MHC class I, peptide binding, sendai virus, immune response, immunoglobulin domain, MHC I, pyrrolidone carboxylic acid, glycoprotein, membrane, transmembrane
Deposited on 2006-03-21, released 2006-03-29
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: 0.2391
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: h-2 class I histocompatibility antigen d-b alpha chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01899 (0-274)
      • conflict (217)
    Domains in SCOPe 2.05: d2ciia1, d2ciia2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d2ciib_
  • Chain 'C':
    Compound: nucleoprotein
    Species: HUMAN PARAINFLUENZA 1 VIRUS, synthetic [TaxId:12730]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2ciiA (A:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwalngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrwe

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2ciiB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    No sequence available.