PDB entry 2cii

View 2cii on RCSB PDB site
Description: the crystal structure of h-2db complexed with a partial peptide epitope suggests an MHC class I assembly-intermediate
Class: complex (antigen/peptide)
Keywords: MHC class I, peptide binding, sendai virus, immune response, immunoglobulin domain, MHC I, pyrrolidone carboxylic acid, glycoprotein, membrane, transmembrane, complex (antigen/peptide)
Deposited on 2006-03-21, released 2006-03-29
The last revision prior to the SCOP 1.73 freeze date was dated 2006-05-03, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: 0.2391
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: h-2 class I histocompatibility antigen d-b alpha chain
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2ciia1, d2ciia2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2ciib1
  • Chain 'C':
    Compound: nucleoprotein
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2ciiA (A:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwalngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrwe

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2ciiB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    No sequence available.