PDB entry 2c7n

View 2c7n on RCSB PDB site
Description: human rabex-5 residues 1-74 in complex with ubiquitin
Class: ubiquitin complex
Keywords: ubiquitin binding domain, endocytosis, nuclear protein, polyprotein, ubl conjugation, ubiquitin complex
Deposited on 2005-11-25, released 2006-02-15
The last revision prior to the SCOP 1.73 freeze date was dated 2006-05-11, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.19751
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: rab guanine nucleotide exchange factor 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2c7na1
  • Chain 'B':
    Compound: Ubiquitin
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2c7nb1
  • Chain 'C':
    Compound: rab guanine nucleotide exchange factor 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2c7nc1
  • Chain 'D':
    Compound: Ubiquitin
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2c7nd1
  • Chain 'E':
    Compound: rab guanine nucleotide exchange factor 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Ubiquitin
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2c7nf1
  • Chain 'G':
    Compound: rab guanine nucleotide exchange factor 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2c7ng1
  • Chain 'H':
    Compound: Ubiquitin
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2c7nh1
  • Chain 'I':
    Compound: rab guanine nucleotide exchange factor 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2c7ni1
  • Chain 'J':
    Compound: Ubiquitin
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2c7nj1
  • Chain 'K':
    Compound: rab guanine nucleotide exchange factor 1
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Ubiquitin
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d2c7nl1
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2c7nA (A:)
    mslkserrgihvdqsdllckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaer
    lqreeeeafassqs
    

    Sequence, based on observed residues (ATOM records): (download)
    >2c7nA (A:)
    lckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqreeeeafassq
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2c7nB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2c7nB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlr
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >2c7nC (C:)
    mslkserrgihvdqsdllckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaer
    lqreeeeafassqs
    

    Sequence, based on observed residues (ATOM records): (download)
    >2c7nC (C:)
    llckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqreeeeafassq
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >2c7nD (D:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2c7nD (D:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlr
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >2c7nF (F:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2c7nF (F:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlr
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >2c7nG (G:)
    mslkserrgihvdqsdllckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaer
    lqreeeeafassqs
    

    Sequence, based on observed residues (ATOM records): (download)
    >2c7nG (G:)
    llckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqreeeeafas
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >2c7nH (H:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2c7nH (H:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >2c7nI (I:)
    mslkserrgihvdqsdllckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaer
    lqreeeeafassqs
    

    Sequence, based on observed residues (ATOM records): (download)
    >2c7nI (I:)
    llckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqreeeeafassqs
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >2c7nJ (J:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2c7nJ (J:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlr
    

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >2c7nL (L:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >2c7nL (L:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlr