SCOP 1.75: Structural Classification of Proteins

PDB entry 2c38

View 2c38 on RCSB PDB site
Description: RNAse ph core of the archaeal exosome in complex with a5 RNA
Class: hydrolase
Keywords: exosome, RNAse ph, rrp41, rrp42, phosphorolytic, exoribonuclease, RNA degradation, archaeal, hydrolase, exonuclease, nuclease
Deposited on 2005-10-04, released 2005-11-23
The last revision prior to the SCOP 1.75 freeze date was dated 2005-11-23, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.276
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOP 1.75: d2c38a1, d2c38a2
Chain 'B':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOP 1.75: d2c38b1, d2c38b2
Chain 'C':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOP 1.75: d2c38c1, d2c38c2
Chain 'D':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOP 1.75: d2c38d1, d2c38d2
Chain 'E':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOP 1.75: d2c38e1, d2c38e2
Chain 'F':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOP 1.75: d2c38f1, d2c38f2
Chain 'G':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOP 1.75: d2c38g1, d2c38g2
Chain 'H':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOP 1.75: d2c38h1, d2c38h2
Chain 'I':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOP 1.75: d2c38i1, d2c38i2
Chain 'J':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOP 1.75: d2c38j1, d2c38j2
Chain 'K':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOP 1.75: d2c38k1, d2c38k2
Chain 'L':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOP 1.75: d2c38l1, d2c38l2
Chain 'M':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOP 1.75: d2c38m1, d2c38m2
Chain 'N':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOP 1.75: d2c38n1, d2c38n2
Chain 'O':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOP 1.75: d2c38o1, d2c38o2
Chain 'P':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (0-247)
Domains in SCOP 1.75: d2c38p1, d2c38p2
Chain 'Q':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOP 1.75: d2c38q1, d2c38q2
Chain 'R':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOP 1.75: d2c38r1, d2c38r2
Chain 'S':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOP 1.75: d2c38s1, d2c38s2
Chain 'T':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOP 1.75: d2c38t1, d2c38t2
Chain 'U':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-End)
Domains in SCOP 1.75: d2c38u1, d2c38u2
Chain 'V':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2
Domains in SCOP 1.75: d2c38v1, d2c38v2
Chain 'W':
Compound: probable exosome complex exonuclease 2
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC0 (0-274)
Domains in SCOP 1.75: d2c38w1, d2c38w2
Chain 'X':
Compound: probable exosome complex exonuclease 1
Species: Sulfolobus solfataricus
Database cross-references and differences (RAF-indexed):
- Uniprot Q9UXC2 (Start-247)
Domains in SCOP 1.75: d2c38x1, d2c38x2
Heterogens: CL, AMP

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>2c38A (A:)
msstpsnqniipiikkesivslfekgirqdgrkltdyrplsitldyakkadgsalvklgt
tmvlagtkleidkpyedtpnqgnlivnvellplayetfepgppdenaielarvvdrslrd
skaldltklviepgksvwtvwldvyvldyggnvldactlasvaalyntkvykveqhsngi
svnknevvgklplnypvvtisvakvdkylvvdpdldeesimdakisfsytpdlkivgiqk
sgkgsmslqdidqaentarstavklleelkkhlgi