PDB entry 2bvq

View 2bvq on RCSB PDB site
Description: structures of three hiv-1 hla-b5703-peptide complexes and identification of related hlas potentially associated with long-term non-progression
Class: glycoprotein/peptide
Keywords: glycoprotein/peptide, MHC, hla-b57, ltnp hiv-1, glycoprotein/peptide complex, MHC I, polymorphism, transmembrane, immunoglobulin domain, pyrrolidone carboxylic acid, immune response
Deposited on 2005-07-01, released 2005-09-07
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.208
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hla class I histocompatibility antigen, b-57 alpha chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P18465 (0-End)
      • conflict (113)
      • conflict (115)
    Domains in SCOPe 2.06: d2bvqa1, d2bvqa2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 2BVQ (1-11)
    • Uniprot P61769 (1-99)
    Domains in SCOPe 2.06: d2bvqb_
  • Chain 'C':
    Compound: hiv-p24
    Species: HUMAN IMMUNODEFICIENCY VIRUS, synthetic [TaxId:12721]
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2bvqA (A:)
gshsmryfytamsrpgrgeprfiavgyvddtqfvrfdsdaasprmaprapwieqegpeyw
dgetrnmkasaqtyrenlrialryynqseagshiiqvmygcdvgpdgrllrghnqyaydg
kdyialnedlsswtaadtaaqitqrkweaarvaeqlrayleglcvewlrrylengketlq
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwep

    Sequence, based on observed residues (ATOM records): (download) 
    >2bvqA (A:)
gshsmryfytamsrpgrgeprfiavgyvddtqfvrfdsdaasprmaprapwieqegpeyw
dgetrnmkasaqtyrenlrialryynqseagshiiqvmygcdvgpdgrllrghnqyaydg
kdyialnedlsswtaadtaaqitqrkweaarvaeqlrayleglcvewlrrylengketlq
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2bvqB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

    Sequence, based on observed residues (ATOM records): (download) 
    >2bvqB (B:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    No sequence available.