PDB entry 2bmk
View 2bmk on RCSB PDB site
Description: fab fragment of plp-dependent catalytic antibody 15a9 in complex with phosphopyridoxyl-d-alanine
Class: immune system
Keywords: catalytic antibody, transamination, pyridoxal-phosphate, hapten, phosphopyridoxyl-l-lysine, immune system
Deposited on
2005-03-14, released
2006-03-03
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.2097
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: fab fragment of catalytic antibody 15a9, light chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2bmka1, d2bmka2 - Chain 'B':
Compound: fab fragment of catalytic antibody 15a9, heavy chain
Species: Mus musculus [TaxId:10090]
Domains in SCOPe 2.06: d2bmkb1, d2bmkb2 - Chain 'H':
Compound: fab fragment of catalytic antibody 15a9, heavy chain
Species: Mus musculus [TaxId:10090]
Domains in SCOPe 2.06: d2bmkh1, d2bmkh2 - Chain 'L':
Compound: fab fragment of catalytic antibody 15a9, light chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2bmkl1, d2bmkl2 - Heterogens: IOD, PDD, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>2bmkA (A:)
dieltqspaimaaspgekvtitcsatsgvnymhwfqqkpgtspklwiystsnlasavpar
fsgsgsgtsysltisrmeaedaatyycqqrstypftfgggtklelkradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrnec
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2bmkB (B:)
evklqesggglvqpghslrlscatsgftftdyymswvrqppgkalewlglirnkangytk
eysasvkgrftisrdnsqsilylqmnalraedsatyycvrdkgsygnyeawfaywgqgtt
vtvssakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpa
vlqsdlytlsssvtvpssprpsetvtcnvahpasstkvdkkivprd
Sequence, based on observed residues (ATOM records): (download)
>2bmkB (B:)
evklqesggglvqpghslrlscatsgftftdyymswvrqppgkalewlglirnkangytk
eysasvkgrftisrdnsqsilylqmnalraedsatyycvrdkgsygnyeawfaywgqgtt
vtvssakttppsvyplapgsqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavl
qsdlytlsssvtvpssprpsetvtcnvahpasstkvdkkivprd
- Chain 'H':
Sequence, based on SEQRES records: (download)
>2bmkH (H:)
evklqesggglvqpghslrlscatsgftftdyymswvrqppgkalewlglirnkangytk
eysasvkgrftisrdnsqsilylqmnalraedsatyycvrdkgsygnyeawfaywgqgtt
vtvssakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpa
vlqsdlytlsssvtvpssprpsetvtcnvahpasstkvdkkivprd
Sequence, based on observed residues (ATOM records): (download)
>2bmkH (H:)
evklqesggglvqpghslrlscatsgftftdyymswvrqppgkalewlglirnkangytk
eysasvkgrftisrdnsqsilylqmnalraedsatyycvrdkgsygnyeawfaywgqgtt
vtvssakttppsvyplapgsnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqs
dlytlsssvtvpssprpsetvtcnvahpasstkvdkkivprd
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>2bmkL (L:)
dieltqspaimaaspgekvtitcsatsgvnymhwfqqkpgtspklwiystsnlasavpar
fsgsgsgtsysltisrmeaedaatyycqqrstypftfgggtklelkradaaptvsifpps
seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
tkdeyerhnsytceathktstspivksfnrnec