PDB entry 2b24

View 2b24 on RCSB PDB site
Description: Crystal structure of naphthalene 1,2-dioxygenase from Rhodococcus sp. bound to indole
Class: oxidoreductase
Keywords: rieske non-heme iron oxygenase, oxidoreductase
Deposited on 2005-09-16, released 2005-10-04
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.287
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: naphthalene dioxygenase large subunit
    Species: Rhodococcus sp. [TaxId:92694]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2b24a1, d2b24a2
  • Chain 'B':
    Compound: naphthalene dioxygenase small subunit
    Species: Rhodococcus sp. [TaxId:92694]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2b24b_
  • Chain 'C':
    Compound: naphthalene dioxygenase large subunit
    Species: Rhodococcus sp. [TaxId:92694]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2b24c1, d2b24c2
  • Chain 'D':
    Compound: naphthalene dioxygenase small subunit
    Species: Rhodococcus sp. [TaxId:92694]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2b24d_
  • Chain 'E':
    Compound: naphthalene dioxygenase large subunit
    Species: Rhodococcus sp. [TaxId:92694]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2b24e1, d2b24e2
  • Chain 'F':
    Compound: naphthalene dioxygenase small subunit
    Species: Rhodococcus sp. [TaxId:92694]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2b24f_
  • Heterogens: FE, FES, IND, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2b24A (A:)
mlsnelrqtlqkglhdvnsdwtvpaaiindpevhdvererifghawvflaheseipergd
yvvryisedqfivcrdeggeirghlnacrhrgmqvcraemgntshfrcpyhgwtysntgs
lvgvpagkdaygnqlkksdwnlrpmpnlasykglifgsldphadsledylgdlkfyldiv
ldrsdaglqvvgapqrwvidanwklgadnfvgdayhtmmthrsmvelglappdpqfalyg
ehihtghghglgiigpppgmplpefmglpeniveelerrltpeqveifrptafihgtvfp
nlsignflmgkdhlsaptafltlrlwhplgpdkmevmsfflvekdapdwfkdesyksylr
tfgisggfeqddaenwrsitrvmggqfaktgelnyqmgrgvlepdpnwtgpgeaypldya
eanqrnfleywmqlmlaesplrdgnsngsgtadastpaaakskspakaea

    Sequence, based on observed residues (ATOM records): (download) 
    >2b24A (A:)
mlsnelrqtlqkglhdvnsdwtvpaaiindpevhdvererifghawvflaheseipergd
yvvryisedqfivcrdeggeirghlnacrhrgmqvcraemgntshfrcpyhgwtysntgs
lvgvpagkdaygnqlkksdwnlrpmpnlasykglifgsldphadsledylgdlkfyldiv
ldrsdaglqvvgapqrwvidanwklgadnfvgdayhtmmthrsmvelglappdpqfalyg
ehihtghghglgiigpppgmplpefmglpeniveelerrltpeqveifrptafihgtvfp
nlsignflmgkdhlsaptafltlrlwhplgpdkmevmsfflvekdapdwfkdesyksylr
tfgisggfeqddaenwrsitrvmggqfaktgelnyqmgrgvlepdpnwtgpgeaypldya
eanqrnfleywmqlmlaesp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2b24B (B:)
mntqtrvsdttvreitewlymeaelldagkyrewlalvtedlsyvvpirvtrereavtdv
vegmthmdddadsmemrvlrleteyawaedppsrsrhfvtnvrvatgdsedefkvtsnll
lyrtrgdvatydvlsgertdvlrragdsflmakrvvlldqttimthnlalim

    Sequence, based on observed residues (ATOM records): (download) 
    >2b24B (B:)
sdttvreitewlymeaelldagkyrewlalvtedlsyvvpirvtrereavtdvvegmthm
dddadsmemrvlrleteyawaedppsrsrhfvtnvrvatgdsedefkvtsnlllyrtrgd
vatydvlsgertdvlrragdsflmakrvvlldqttimthnlalim

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2b24C (C:)
mlsnelrqtlqkglhdvnsdwtvpaaiindpevhdvererifghawvflaheseipergd
yvvryisedqfivcrdeggeirghlnacrhrgmqvcraemgntshfrcpyhgwtysntgs
lvgvpagkdaygnqlkksdwnlrpmpnlasykglifgsldphadsledylgdlkfyldiv
ldrsdaglqvvgapqrwvidanwklgadnfvgdayhtmmthrsmvelglappdpqfalyg
ehihtghghglgiigpppgmplpefmglpeniveelerrltpeqveifrptafihgtvfp
nlsignflmgkdhlsaptafltlrlwhplgpdkmevmsfflvekdapdwfkdesyksylr
tfgisggfeqddaenwrsitrvmggqfaktgelnyqmgrgvlepdpnwtgpgeaypldya
eanqrnfleywmqlmlaesplrdgnsngsgtadastpaaakskspakaea

    Sequence, based on observed residues (ATOM records): (download) 
    >2b24C (C:)
mlsnelrqtlqkglhdvnsdwtvpaaiindpevhdvererifghawvflaheseipergd
yvvryisedqfivcrdeggeirghlnacrhrgmqvcraemgntshfrcpyhgwtysntgs
lvgvpagkdaygnqlkksdwnlrpmpnlasykglifgsldphadsledylgdlkfyldiv
ldrsdaglqvvgapqrwvidanwklgadnfvgdayhtmmthrsmvelglappdpqfalyg
ehihtghghglgiigpppgmplpefmglpeniveelerrltpeqveifrptafihgtvfp
nlsignflmgkdhlsaptafltlrlwhplgpdkmevmsfflvekdapdwfkdesyksylr
tfgisggfeqddaenwrsitrvmggqfaktgelnyqmgrgvlepdpnwtgpgeaypldya
eanqrnfleywmqlmlaesp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2b24D (D:)
mntqtrvsdttvreitewlymeaelldagkyrewlalvtedlsyvvpirvtrereavtdv
vegmthmdddadsmemrvlrleteyawaedppsrsrhfvtnvrvatgdsedefkvtsnll
lyrtrgdvatydvlsgertdvlrragdsflmakrvvlldqttimthnlalim

    Sequence, based on observed residues (ATOM records): (download) 
    >2b24D (D:)
sdttvreitewlymeaelldagkyrewlalvtedlsyvvpirvtrereavtdvvegmthm
dddadsmemrvlrleteyawaedppsrsrhfvtnvrvatgdsedefkvtsnlllyrtrgd
vatydvlsgertdvlrragdsflmakrvvlldqttimthnlalim

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2b24E (E:)
mlsnelrqtlqkglhdvnsdwtvpaaiindpevhdvererifghawvflaheseipergd
yvvryisedqfivcrdeggeirghlnacrhrgmqvcraemgntshfrcpyhgwtysntgs
lvgvpagkdaygnqlkksdwnlrpmpnlasykglifgsldphadsledylgdlkfyldiv
ldrsdaglqvvgapqrwvidanwklgadnfvgdayhtmmthrsmvelglappdpqfalyg
ehihtghghglgiigpppgmplpefmglpeniveelerrltpeqveifrptafihgtvfp
nlsignflmgkdhlsaptafltlrlwhplgpdkmevmsfflvekdapdwfkdesyksylr
tfgisggfeqddaenwrsitrvmggqfaktgelnyqmgrgvlepdpnwtgpgeaypldya
eanqrnfleywmqlmlaesplrdgnsngsgtadastpaaakskspakaea

    Sequence, based on observed residues (ATOM records): (download) 
    >2b24E (E:)
mlsnelrqtlqkglhdvnsdwtvpaaiindpevhdvererifghawvflaheseipergd
yvvryisedqfivcrdeggeirghlnacrhrgmqvcraemgntshfrcpyhgwtysntgs
lvgvpagkdaygnqlkksdwnlrpmpnlasykglifgsldphadsledylgdlkfyldiv
ldrsdaglqvvgapqrwvidanwklgadnfvgdayhtmmthrsmvelglappdpqfalyg
ehihtghghglgiigpppgmplpefmglpeniveelerrltpeqveifrptafihgtvfp
nlsignflmgkdhlsaptafltlrlwhplgpdkmevmsfflvekdapdwfkdesyksylr
tfgisggfeqddaenwrsitrvmggqfaktgelnyqmgrgvlepdpnwtgpgeaypldya
eanqrnfleywmqlmlaesp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2b24F (F:)
mntqtrvsdttvreitewlymeaelldagkyrewlalvtedlsyvvpirvtrereavtdv
vegmthmdddadsmemrvlrleteyawaedppsrsrhfvtnvrvatgdsedefkvtsnll
lyrtrgdvatydvlsgertdvlrragdsflmakrvvlldqttimthnlalim

    Sequence, based on observed residues (ATOM records): (download) 
    >2b24F (F:)
sdttvreitewlymeaelldagkyrewlalvtedlsyvvpirvtrereavtdvvegmthm
dddadsmemrvlrleteyawaedppsrsrhfvtnvrvatgdsedefkvtsnlllyrtrgd
vatydvlsgertdvlrragdsflmakrvvlldqttimthnlalim