PDB entry 2asj

View 2asj on RCSB PDB site
Description: oxoG-modified Preinsertion Binary Complex
Class: transferase/DNA
Keywords: DNA polymerase, 8-oxoguanine, Y-family, lesion bypass
Deposited on 2005-08-23, released 2006-01-10
The last revision prior to the SCOP 1.75 freeze date was dated 2006-01-17, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.249
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase IV
    Species: Sulfolobus solfataricus
    Gene: dbh, dpo4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q97W02
      • cloning artifact (8)
    Domains in SCOP 1.75: d2asja1, d2asja2
  • Chain 'B':
    Compound: DNA polymerase IV
    Species: Sulfolobus solfataricus
    Gene: dbh, dpo4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q97W02 (9-End)
      • cloning artifact (8)
    Domains in SCOP 1.75: d2asjb1, d2asjb2
  • Chain 'D':
    Compound: 5'-d(*gp*gp*tp*tp*gp*gp*ap*tp*gp*gp*tp*ap*(ddg))-3'
  • Chain 'E':
    Compound: 5'-d(*cp*tp*ap*ap*cp*(8og)*cp*tp*ap*cp*cp*ap*tp*cp*cp*ap*ap*cp*c)-3'
  • Chain 'H':
    Compound: 5'-d(*gp*gp*tp*tp*gp*gp*ap*tp*gp*gp*tp*ap*(ddg))-3'
  • Chain 'J':
    Compound: 5'-d(*cp*tp*ap*ap*cp*(8og)*cp*tp*ap*cp*cp*ap*tp*cp*cp*ap*ap*cp*c)-3'
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >2asjA (A:)
    gshmgggggivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyeark
    fgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldis
    dkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevk
    rlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislarde
    ynepirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavted
    ldivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
    

    Sequence, based on observed residues (ATOM records): (download)
    >2asjA (A:)
    givlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
    iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
    aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
    advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
    vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
    tfphgisketaysesvkllqkileederkirrigvrfskfi
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >2asjB (B:)
    gshmgggggivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyeark
    fgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldis
    dkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevk
    rlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislarde
    ynepirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavted
    ldivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
    

    Sequence, based on observed residues (ATOM records): (download)
    >2asjB (B:)
    givlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
    iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
    aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
    advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
    vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
    tfphgisketaysesvkllqkileederkirrigvrfskfi
    

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'J':
    No sequence available.