PDB entry 2aen
View 2aen on RCSB PDB site
Description: Crystal structure of the rotavirus strain DS-1 VP8* core
Class: viral protein
Keywords: Rotavirus; VP4; VP8*; Neutralization antigen; Spike protein, VIRAL PROTEIN
Deposited on
2005-07-22, released
2006-02-07
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.16
AEROSPACI score: 0.61
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Outer capsid protein VP4, VP8* core
Species: Rotavirus A [TaxId:10941]
Gene: GENOME SEGEMENT 4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2aena_ - Chain 'B':
Compound: Outer capsid protein VP4, VP8* core
Species: Rotavirus A [TaxId:10941]
Gene: GENOME SEGEMENT 4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2aenb_ - Chain 'C':
Compound: Outer capsid protein VP4, VP8* core
Species: Rotavirus A [TaxId:10941]
Gene: GENOME SEGEMENT 4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2aenc_ - Chain 'D':
Compound: Outer capsid protein VP4, VP8* core
Species: Rotavirus A [TaxId:10941]
Gene: GENOME SEGEMENT 4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2aend_ - Chain 'E':
Compound: Outer capsid protein VP4, VP8* core
Species: Rotavirus A [TaxId:10941]
Gene: GENOME SEGEMENT 4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2aene_ - Chain 'F':
Compound: Outer capsid protein VP4, VP8* core
Species: Rotavirus A [TaxId:10941]
Gene: GENOME SEGEMENT 4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2aenf_ - Chain 'G':
Compound: Outer capsid protein VP4, VP8* core
Species: Rotavirus A [TaxId:10941]
Gene: GENOME SEGEMENT 4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2aeng_ - Chain 'H':
Compound: Outer capsid protein VP4, VP8* core
Species: Rotavirus A [TaxId:10941]
Gene: GENOME SEGEMENT 4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d2aenh_ - Heterogens: GOL, EOH, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>2aenA (A:)
tvepvldgpyqpttfkppndywllissntngvvyestnnndfwtaviavephvsqtnrqy
ilfgenkqfnvennsdkwkffemfkgssqgdfsnrrtltssnrlvgmlkyggrvwtfhge
tprattdssntadlnnisiiihsefyiiprsqeskcneyinngl
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>2aenB (B:)
tvepvldgpyqpttfkppndywllissntngvvyestnnndfwtaviavephvsqtnrqy
ilfgenkqfnvennsdkwkffemfkgssqgdfsnrrtltssnrlvgmlkyggrvwtfhge
tprattdssntadlnnisiiihsefyiiprsqeskcneyinngl
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>2aenC (C:)
tvepvldgpyqpttfkppndywllissntngvvyestnnndfwtaviavephvsqtnrqy
ilfgenkqfnvennsdkwkffemfkgssqgdfsnrrtltssnrlvgmlkyggrvwtfhge
tprattdssntadlnnisiiihsefyiiprsqeskcneyinngl
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>2aenD (D:)
tvepvldgpyqpttfkppndywllissntngvvyestnnndfwtaviavephvsqtnrqy
ilfgenkqfnvennsdkwkffemfkgssqgdfsnrrtltssnrlvgmlkyggrvwtfhge
tprattdssntadlnnisiiihsefyiiprsqeskcneyinngl
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>2aenE (E:)
tvepvldgpyqpttfkppndywllissntngvvyestnnndfwtaviavephvsqtnrqy
ilfgenkqfnvennsdkwkffemfkgssqgdfsnrrtltssnrlvgmlkyggrvwtfhge
tprattdssntadlnnisiiihsefyiiprsqeskcneyinngl
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>2aenF (F:)
tvepvldgpyqpttfkppndywllissntngvvyestnnndfwtaviavephvsqtnrqy
ilfgenkqfnvennsdkwkffemfkgssqgdfsnrrtltssnrlvgmlkyggrvwtfhge
tprattdssntadlnnisiiihsefyiiprsqeskcneyinngl
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>2aenG (G:)
tvepvldgpyqpttfkppndywllissntngvvyestnnndfwtaviavephvsqtnrqy
ilfgenkqfnvennsdkwkffemfkgssqgdfsnrrtltssnrlvgmlkyggrvwtfhge
tprattdssntadlnnisiiihsefyiiprsqeskcneyinngl
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>2aenH (H:)
tvepvldgpyqpttfkppndywllissntngvvyestnnndfwtaviavephvsqtnrqy
ilfgenkqfnvennsdkwkffemfkgssqgdfsnrrtltssnrlvgmlkyggrvwtfhge
tprattdssntadlnnisiiihsefyiiprsqeskcneyinngl