PDB entry 1zhn

View 1zhn on RCSB PDB site
Description: Crystal Structure of mouse CD1d bound to the self ligand phosphatidylcholine
Class: immune system, membrane protein
Keywords: MHC fold; antigen binding domain; Ig fold
Deposited on 2005-04-26, released 2005-07-19
The last revision prior to the SCOP 1.75 freeze date was dated 2005-07-19, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.222
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CD1d1 antigen
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed):
    • GB BAB22206 (0-272)
    Domains in SCOP 1.75: d1zhna1, d1zhna2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1zhnb1
  • Heterogens: NAG, PC6, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1zhnA (A:)
    nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
    qhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvafqgkyvv
    rfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekq
    ekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwy
    lqatldveageeaglacrvkhsslggqdiilyw
    

    Sequence, based on observed residues (ATOM records): (download)
    >1zhnA (A:)
    nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
    qhmfqvyrvsftrdiqelvkmmspkeieiqlsagcemypgnasesflhvafqgkyvvrfw
    gtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekqekp
    vawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwylqa
    tldveageeaglacrvkhsslggqdiilyw
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1zhnB (B:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhdsmaepktvywdrdm