PDB entry 1zem

View 1zem on RCSB PDB site
Description: Crystal Structure of NAD+-Bound Xylitol Dehydrogenase
Class: Oxidoreductase
Keywords: Rossmann fold, Dinucleotide-binding domain, Oxidoreductase
Deposited on 2005-04-19, released 2006-03-28
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.167
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: xylitol dehydrogenase
    Species: Gluconobacter oxydans [TaxId:442]
    Gene: AB091690
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1zema1
  • Chain 'B':
    Compound: xylitol dehydrogenase
    Species: Gluconobacter oxydans [TaxId:442]
    Gene: AB091690
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1zemb_
  • Chain 'C':
    Compound: xylitol dehydrogenase
    Species: Gluconobacter oxydans [TaxId:442]
    Gene: AB091690
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1zemc_
  • Chain 'D':
    Compound: xylitol dehydrogenase
    Species: Gluconobacter oxydans [TaxId:442]
    Gene: AB091690
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1zemd_
  • Chain 'E':
    Compound: xylitol dehydrogenase
    Species: Gluconobacter oxydans [TaxId:442]
    Gene: AB091690
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1zeme_
  • Chain 'F':
    Compound: xylitol dehydrogenase
    Species: Gluconobacter oxydans [TaxId:442]
    Gene: AB091690
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1zemf_
  • Chain 'G':
    Compound: xylitol dehydrogenase
    Species: Gluconobacter oxydans [TaxId:442]
    Gene: AB091690
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1zemg_
  • Chain 'H':
    Compound: xylitol dehydrogenase
    Species: Gluconobacter oxydans [TaxId:442]
    Gene: AB091690
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1zemh_
  • Heterogens: MG, NAD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1zemA (A:)
mskkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvears
yvcdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtga
fhvlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapyni
rvnaispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgv
vafllgddssfmtgvnlpiagg

    Sequence, based on observed residues (ATOM records): (download) 
    >1zemA (A:)
kkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvearsyv
cdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtgafh
vlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapynirv
naispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgvva
fllgddssfmtgvnlpiagg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1zemB (B:)
mskkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvears
yvcdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtga
fhvlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapyni
rvnaispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgv
vafllgddssfmtgvnlpiagg

    Sequence, based on observed residues (ATOM records): (download) 
    >1zemB (B:)
kkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvearsyv
cdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtgafh
vlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapynirv
naispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgvva
fllgddssfmtgvnlpiagg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1zemC (C:)
mskkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvears
yvcdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtga
fhvlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapyni
rvnaispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgv
vafllgddssfmtgvnlpiagg

    Sequence, based on observed residues (ATOM records): (download) 
    >1zemC (C:)
kkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvearsyv
cdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtgafh
vlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapynirv
naispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgvva
fllgddssfmtgvnlpiagg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1zemD (D:)
mskkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvears
yvcdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtga
fhvlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapyni
rvnaispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgv
vafllgddssfmtgvnlpiagg

    Sequence, based on observed residues (ATOM records): (download) 
    >1zemD (D:)
kkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvearsyv
cdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtgafh
vlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapynirv
naispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgvva
fllgddssfmtgvnlpiagg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1zemE (E:)
mskkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvears
yvcdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtga
fhvlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapyni
rvnaispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgv
vafllgddssfmtgvnlpiagg

    Sequence, based on observed residues (ATOM records): (download) 
    >1zemE (E:)
kkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvearsyv
cdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtgafh
vlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapynirv
naispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgvva
fllgddssfmtgvnlpiagg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1zemF (F:)
mskkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvears
yvcdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtga
fhvlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapyni
rvnaispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgv
vafllgddssfmtgvnlpiagg

    Sequence, based on observed residues (ATOM records): (download) 
    >1zemF (F:)
kkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvearsyv
cdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtgafh
vlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapynirv
naispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgvva
fllgddssfmtgvnlpiagg

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1zemG (G:)
mskkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvears
yvcdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtga
fhvlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapyni
rvnaispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgv
vafllgddssfmtgvnlpiagg

    Sequence, based on observed residues (ATOM records): (download) 
    >1zemG (G:)
kkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvearsyv
cdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtgafh
vlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapynirv
naispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgvva
fllgddssfmtgvnlpiagg

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1zemH (H:)
mskkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvears
yvcdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtga
fhvlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapyni
rvnaispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgv
vafllgddssfmtgvnlpiagg

    Sequence, based on observed residues (ATOM records): (download) 
    >1zemH (H:)
kkfngkvclvtgaggniglatalrlaeegtaialldmnrealekaeasvrekgvearsyv
cdvtseeavigtvdsvvrdfgkidflfnnagyqgafapvqdypsddfarvltinvtgafh
vlkavsrqmitqnygrivntasmagvkgppnmaaygtskgaiialtetaaldlapynirv
naispgymgpgfmwerqvelqakvgsqyfstdpkvvaqqmigsvpmrrygdineipgvva
fllgddssfmtgvnlpiagg